Pairwise Alignments

Query, 318 a.a., permease from Methanococcus maripaludis S2

Subject, 338 a.a., permease (RefSeq) from Shewanella loihica PV-4

 Score =  233 bits (594), Expect = 5e-66
 Identities = 116/334 (34%), Positives = 198/334 (59%), Gaps = 17/334 (5%)

Query: 1   MFGWLDYGARYIVENILNMSMDTAIGSSVHFFIYDSLKIVILLSIMIFSISYIRSYFPPE 60
           M  W    A  +V ++L +S  +A G ++HFF+ D+ KI  LL +MI+ I ++R+    E
Sbjct: 1   MLAWFTQLADLLVYDLLGLSSQSAAGQALHFFVEDTSKIFALLVVMIYLIGWLRAALNVE 60

Query: 61  KTKKILERYSGVSGNIMASLLGTVTPFCSCSSVPIFIGFIEAGVPLGVTLSFLITSPIVN 120
           + +  L     + G  + +  G +TPFCSCSS+P+F+GF  AG+P+G+T++FL+TSP++N
Sbjct: 61  RVRDYLAGKPKLLGYGLGAGFGAITPFCSCSSIPVFLGFTTAGIPVGITMAFLLTSPLIN 120

Query: 121 EAAFAVLLASFGWQIAMIYVVSGVIIGVVGGLIIGKLGMENQVEEYVYSIRSRARKIKEL 180
           E A  +L +  G +I ++Y ++G+ IG++GG ++  L  E  ++    +   R     + 
Sbjct: 121 EVAILLLFSLLGAKITLLYALTGITIGMLGGALLDLLHAERWLQPLAANAYRRGATQTQT 180

Query: 181 TQ-----------------KERLKFAYDSTRDIVKRVWLYILIGIGIGAIIHGYAPEEVL 223
           T                  ++R +FA   T  I  RVW +++IG+GIGA +HG+ P   L
Sbjct: 181 TASASDTYTPDESTPGISWRQRHQFAKQETLTIFGRVWKWVIIGVGIGAALHGFVPAGYL 240

Query: 224 AKYAGPENPLAVIFATIIAVPLYSNALGTIPIAEALIGKGVGIGTALAFMMATTALSFPE 283
               G     +V  A ++ +PLY+NA G IP+ E+L+ +GV +GT LAF M+T A SFPE
Sbjct: 241 EANLGDGQWWSVPIAVLMGIPLYANATGVIPVLESLLIQGVPLGTTLAFCMSTVAASFPE 300

Query: 284 AVLLRKVIKPKLIAVFFGITSIAIVITGYLFNIL 317
            V+L++V++ +L+A+ F +  +A  + G++ N++
Sbjct: 301 FVMLKQVMQWRLLALLFALLLVAFTLMGWVLNLV 334