Pairwise Alignments

Query, 318 a.a., permease from Methanococcus maripaludis S2

Subject, 330 a.a., permease (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  314 bits (804), Expect = 2e-90
 Identities = 146/316 (46%), Positives = 222/316 (70%), Gaps = 2/316 (0%)

Query: 5   LDYGARYIVENILNMSMDTAIGSSVHFFIYDSLKIVILLSIMIFSISYIRSYFPPEKTKK 64
           L   +R +   +L ++  + +G +V FF+YD+ K+++LLS+++F I  +RS+F P++T++
Sbjct: 15  LPAASRSLTYGMLGLTPGSHLGEAVEFFLYDTPKVLMLLSLVVFGIGLVRSFFTPQRTRR 74

Query: 65  ILERYSGVSGNIMASLLGTVTPFCSCSSVPIFIGFIEAGVPLGVTLSFLITSPIVNEAAF 124
           +L       GN++A+LLG VTPFCSCS+VP+FIGF+ AGVPLGVT SFL+++P++NE A 
Sbjct: 75  LLAGRGEAVGNVLAALLGIVTPFCSCSAVPLFIGFVSAGVPLGVTFSFLVSAPMINEIAV 134

Query: 125 AVLLASFGWQIAMIYVVSGVIIGVVGGLIIGKLGMENQVEEYVYSIRSRARKIKE--LTQ 182
            +L    GW++A +Y  +G+ I +V G IIG+LGME  +E +V  +R+ A ++ +  L+ 
Sbjct: 135 VMLYGLLGWKVAALYAGTGLAIAIVSGWIIGRLGMERHIEGWVLQVRAEAEQMHDAGLSW 194

Query: 183 KERLKFAYDSTRDIVKRVWLYILIGIGIGAIIHGYAPEEVLAKYAGPENPLAVIFATIIA 242
             R+ +   + RDIV +VW ++++GI +GA IHGY PE  +A   G     AV  A  I 
Sbjct: 195 SGRIDYGVQAMRDIVGKVWPWVVLGIAVGAGIHGYVPEGFMASIMGRGAWWAVPLAVAIG 254

Query: 243 VPLYSNALGTIPIAEALIGKGVGIGTALAFMMATTALSFPEAVLLRKVIKPKLIAVFFGI 302
           +P+YSNA G IP+ +AL+GKG  +GT LAFMMA  ALS PEAV+LR+V+KP+L+AVFFG+
Sbjct: 255 IPMYSNAAGMIPVVQALLGKGAALGTVLAFMMAVIALSLPEAVMLRRVLKPRLVAVFFGV 314

Query: 303 TSIAIVITGYLFNILL 318
             + I++ GYLFN L+
Sbjct: 315 VGLGIMLVGYLFNALV 330