Pairwise Alignments

Query, 318 a.a., permease from Methanococcus maripaludis S2

Subject, 331 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  248 bits (632), Expect = 2e-70
 Identities = 117/317 (36%), Positives = 199/317 (62%), Gaps = 10/317 (3%)

Query: 9   ARYIVENILNMSMDTAIGSSVHFFIYDSLKIVILLSIMIFSISYIRSYFPPEKTKKILER 68
           A ++V  +  +   +A+G +VHFF+ D  KI +LL +MI+ I+ +R+    E+ +  L  
Sbjct: 9   ATWLVYGMFGLEAGSALGGAVHFFVEDVSKIFVLLLVMIYVIALLRASLDVERVRDYLAG 68

Query: 69  YSGVSGNIMASLLGTVTPFCSCSSVPIFIGFIEAGVPLGVTLSFLITSPIVNEAAFAVLL 128
            +   G ++ S+ G +TPFCSCSS+P+F+GF  AG+PLG+T++FLITSP++NE A  +L+
Sbjct: 69  KNKGVGYLLGSIFGAITPFCSCSSIPVFLGFTSAGIPLGITIAFLITSPLINEVAVLLLM 128

Query: 129 ASFGWQIAMIYVVSGVIIGVVGGLIIGKLGMENQVEEYVYSIRSRARKI----------K 178
           +  GW+  ++YV  G+ +G++GG+++  +  E  ++ +      R R++          +
Sbjct: 129 SLLGWKFTLLYVAVGMTVGMLGGVLLDAMKAERWLQSFAAEALLRGRQMAASDVVSTVAR 188

Query: 179 ELTQKERLKFAYDSTRDIVKRVWLYILIGIGIGAIIHGYAPEEVLAKYAGPENPLAVIFA 238
            L+  ER +FA     +I  RVW +++IG+G+GA +HG+ PE  +  + G     +V  A
Sbjct: 189 VLSLSERHQFAKAEAIEIFGRVWKWVIIGVGLGAALHGFVPEGWIEAHLGQGQWWSVPVA 248

Query: 239 TIIAVPLYSNALGTIPIAEALIGKGVGIGTALAFMMATTALSFPEAVLLRKVIKPKLIAV 298
            +I +PLYSNA G IP+ E+L+  G+ IGT LAF M+T A SFPE +LL++V++ +L+A+
Sbjct: 249 VLIGIPLYSNATGIIPVMESLLANGLPIGTTLAFCMSTVAASFPEFILLKQVMQWRLLAL 308

Query: 299 FFGITSIAIVITGYLFN 315
              +   A  + G++FN
Sbjct: 309 LLVVLLTAFTLVGWMFN 325