Pairwise Alignments

Query, 318 a.a., permease from Methanococcus maripaludis S2

Subject, 497 a.a., permease (RefSeq) from Shewanella sp. ANA-3

 Score = 64.7 bits (156), Expect = 4e-15
 Identities = 43/134 (32%), Positives = 72/134 (53%), Gaps = 7/134 (5%)

Query: 186 LKFAYDSTRDIVKRVWLYILIGIGIGAIIHGYAPEEVLAKYAGPENPLAVIFATIIAVPL 245
           LK+A     D+V+   L++L+G+   A++  Y P + LAK+   +  LA++   +++VP+
Sbjct: 316 LKYA---ATDLVRDTTLWLLVGLFFAALVQTYVPADFLAKWG--DGLLAMLVMVLVSVPM 370

Query: 246 YSNALGTIPIAEALIGKGVGIGTALAFMMATTALSFPE-AVLLRKVIKPKLIAVFFGITS 304
           Y  A  + PIA  L+  GV  G  L FMMA  A +     V+ +++ K  L     G+  
Sbjct: 371 YICATASTPIAAGLLLAGVSPGAVLVFMMAGPATNIATLGVVTKELGKRALYGYLGGVLG 430

Query: 305 IAIVITGYLFNILL 318
           +A+V  G L N L+
Sbjct: 431 VALV-AGALVNYLV 443



 Score = 51.6 bits (122), Expect = 4e-11
 Identities = 23/81 (28%), Positives = 42/81 (51%)

Query: 76  IMASLLGTVTPFCSCSSVPIFIGFIEAGVPLGVTLSFLITSPIVNEAAFAVLLASFGWQI 135
           + A+LLG   P CSC  +P  +G   +G     T SFL+++P     +  V     G  +
Sbjct: 49  VKAALLGAPLPLCSCGVIPAAVGLRRSGASKAATTSFLVSTPETGVDSVTVSYVLLGPFM 108

Query: 136 AMIYVVSGVIIGVVGGLIIGK 156
           A++  ++ +   +V GL++G+
Sbjct: 109 AIVRPIAAITSAIVAGLLVGR 129



 Score = 42.0 bits (97), Expect = 3e-08
 Identities = 32/139 (23%), Positives = 62/139 (44%), Gaps = 4/139 (2%)

Query: 20  SMDTAIGSSVHFFIYDSLKIVIL-LSIMIFSISYIRSYFPPEKTKKILERYSGVSGNIMA 78
           S+   IG  + +   D ++   L L + +F  + +++Y P +   K  +   G+   ++ 
Sbjct: 307 SVIARIGLGLKYAATDLVRDTTLWLLVGLFFAALVQTYVPADFLAKWGD---GLLAMLVM 363

Query: 79  SLLGTVTPFCSCSSVPIFIGFIEAGVPLGVTLSFLITSPIVNEAAFAVLLASFGWQIAMI 138
            L+      C+ +S PI  G + AGV  G  L F++  P  N A   V+    G +    
Sbjct: 364 VLVSVPMYICATASTPIAAGLLLAGVSPGAVLVFMMAGPATNIATLGVVTKELGKRALYG 423

Query: 139 YVVSGVIIGVVGGLIIGKL 157
           Y+   + + +V G ++  L
Sbjct: 424 YLGGVLGVALVAGALVNYL 442



 Score = 33.5 bits (75), Expect = 1e-05
 Identities = 24/111 (21%), Positives = 48/111 (43%), Gaps = 1/111 (0%)

Query: 203 YILIGIGIGAIIHGYAPEEVLAKYAGPENPLAVIFATIIAVPLYSNALGTIPIAEALIGK 262
           ++L+G+ +  ++  + P   + K  G      V+ A ++  PL   + G IP A  L   
Sbjct: 16  WLLLGLILAGLLKVFVPMAWMQKQLGGHGFKTVVKAALLGAPLPLCSCGVIPAAVGLRRS 75

Query: 263 GVGIGTALAFMMATTALSFPEAVLLRKVIKPKLIAVFFGITSIAIVITGYL 313
           G       +F+++T      ++V +  V+    +A+   I +I   I   L
Sbjct: 76  GASKAATTSFLVSTPETGV-DSVTVSYVLLGPFMAIVRPIAAITSAIVAGL 125