Pairwise Alignments

Query, 316 a.a., iron ABC transporter permease from Methanococcus maripaludis S2

Subject, 380 a.a., iron-compound ABC transporter, permease protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  147 bits (370), Expect = 5e-40
 Identities = 103/332 (31%), Positives = 172/332 (51%), Gaps = 37/332 (11%)

Query: 16  LFSLFVGRY---MFDPSLIFTNSLANNIFFDIRLPRAIAVSLAGASLALAGVSFQNIFKN 72
           +F++F+ ++       +   T ++ + I  ++RLPR +   +AGA L+LAG   Q + +N
Sbjct: 52  VFNVFIDKFSQLFMGENAPSTAAMTDRIVMELRLPRILLAFVAGAGLSLAGSVLQTVTRN 111

Query: 73  YLAGPNILGVTSGSAFGASIAILFFAYNPYL-------------------------VQFS 107
            LA P + G++SG++FGA + +  F+ + +                          + F 
Sbjct: 112 PLADPYLFGISSGASFGAVVMLTLFSGSGFFANAGVIANSGIFSGAEILAGLQWFSLPFG 171

Query: 108 AFIFGVIAVYIAYKLSSL-LKSGIVGLILSGMAISAFFSAMIGLIKYVADPYEKLPTIVF 166
           AFI   ++V I   LS L L S +  ++LSG+A S  F A+  L+ Y A P +   +++F
Sbjct: 172 AFIGASLSVLIVLALSGLGLNSQVERMLLSGVATSFMFGALTSLLLYFASP-QATASVLF 230

Query: 167 WLLGSFVGLRWVDLGISVIPMLIGIIGLVMLKWVFNILA--TGDENAKSLGVDSKKLKNI 224
           W LGSF    W  L +  I +L+     ++L W   I+A   GDE A +LGV+  KL+  
Sbjct: 231 WSLGSFAKASWSLLILPTIVVLVSF--FIILGWKRQIMALQAGDETAHTLGVNVPKLRLN 288

Query: 225 TIFLATLAASASTSLAGMIQWVGVVSPHIARLLVGVDNRKLVPASAFVGATLLLLCDTLA 284
            + L +L  +   +  G I +VG++ PH  RLL     R+ +  +A VG   ++  D LA
Sbjct: 289 MLLLCSLITAILVATCGGIGFVGLMIPHTVRLL--FPGRQPILLTALVGGLFMVWIDVLA 346

Query: 285 RTLTPS-EIPISIITSFIGAPILIIILSKRGV 315
           R L  + E+P+ IIT+ IG+   ++IL +R V
Sbjct: 347 RCLLGNQELPVGIITASIGSFFFLLILRRRKV 378