Pairwise Alignments

Query, 316 a.a., iron ABC transporter permease from Methanococcus maripaludis S2

Subject, 338 a.a., transport system permease protein (RefSeq) from Shewanella sp. ANA-3

 Score =  182 bits (463), Expect = 8e-51
 Identities = 107/284 (37%), Positives = 165/284 (58%), Gaps = 18/284 (6%)

Query: 43  DIRLPRAIAVSLAGASLALAGVSFQNIFKNYLAGPNILGVTSGSAFGASIAILFFAY-NP 101
           ++RLPR +     GA LA  G   Q +F+N LA P I+GV+SG+A GA+I I+ F +   
Sbjct: 61  NVRLPRTLLALAVGAMLAQCGAVMQGLFRNPLADPGIIGVSSGAALGAAICIVQFPHAES 120

Query: 102 YLVQFSAFIFGVIAVYIAYKL-SSLLKSGIVGLILSGMAISAFFSAMIGLIKYVADPYEK 160
            ++  SAF  G+I   I Y+L SS L + +V L+LSG+A++A   A IG++ Y+A+    
Sbjct: 121 VMISVSAFSSGLITTLIVYRLASSALGTSVVLLLLSGVAVAALAGAGIGVLTYLANDMA- 179

Query: 161 LPTIVFWLLGSFVGLRWVDLGISVIPMLIGIIGLVMLKWVFN-------ILATGDENAKS 213
           L  +  W +GS  G +W  +G+ ++        L +L W FN        L  G+  A+ 
Sbjct: 180 LRDLTLWQMGSIAGAQWQYVGLCLVV-------LALLSWQFNRDAKALNALLLGEAEARH 232

Query: 214 LGVDSKKLKNITIFLATLAASASTSLAGMIQWVGVVSPHIARLLVGVDNRKLVPASAFVG 273
           LG+D   LK   I L  L    S +  G+I ++G+V PH+ R+L+G D+++L+P SA +G
Sbjct: 233 LGIDVDSLKLRLILLCALGVGVSVAATGIIGFIGLVVPHLVRMLLGPDHQRLLPMSALLG 292

Query: 274 ATLLLLCDTLART-LTPSEIPISIITSFIGAPILIIILSKRGVK 316
           A LL L D  AR  L P+E+P+ ++T+ IGAP  I +L ++  K
Sbjct: 293 AALLALADIGARAFLPPAELPVGLVTALIGAPFFIFLLLQQRSK 336