Pairwise Alignments

Query, 353 a.a., ABC transporter substrate-binding protein from Methanococcus maripaludis S2

Subject, 274 a.a., periplasmic binding protein (RefSeq) from Shewanella loihica PV-4

 Score = 49.3 bits (116), Expect = 1e-10
 Identities = 52/246 (21%), Positives = 98/246 (39%), Gaps = 18/246 (7%)

Query: 49  SPVERVVSNYGLIPPIIYLFGEGDKIVAGRGVMGADEFIDAVDPEFKTRSKDIKSDNVEE 108
           +P +R+++       +++  G GD +VA        +F DA   +   R        +E+
Sbjct: 23  APAKRIIALSPHGVEMLFSIGAGDSVVA---TTDHADFPDAA--KAIPRIGGYYGIQIEK 77

Query: 109 IKSLNPDVIFAPSWGSQQGQYPQLKSLGIPVVFIDIETASNYYKTIEMMGEVFQKEAYAQ 168
           +  L+PD+I     G+++    +L  LG P+   D +T       +  +G++  KE  A+
Sbjct: 78  VIELDPDLIVIWGGGNKREDIERLTQLGYPIYNSDPKTLEAVADDLLALGKLTGKEREAE 137

Query: 169 ELIDYYNQSTNDVLKRTASISENEKPRVLFLVYDQRKNSYWTPGGEFYQNNLITMAGGKT 228
            + + Y      ++   A   EN     + + Y        T     +   +I +  G+ 
Sbjct: 138 RVAEQY------LIGLKALSKENRAKAAVRVFYQLWSVPLMTVAEGSWIEQIIQVCHGEN 191

Query: 229 VSSDLPTGKAQINVEQAASWNPDVIITSAHTMEYPSTKVKEDVLTDEGWKEINAVKSGNV 288
           V SD      Q+++E      P VI+ S               +    W+EI AVK  ++
Sbjct: 192 VFSDAGNEYPQVSLEAVLLKQPQVILQSQDEGNVRG-------IDWSAWQEIPAVKQRHI 244

Query: 289 YAMPFD 294
           Y +  D
Sbjct: 245 YQLDAD 250