Pairwise Alignments

Query, 353 a.a., ABC transporter substrate-binding protein from Methanococcus maripaludis S2

Subject, 254 a.a., ABC transporter, periplasmic substrate-binding protein, putative (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 58.2 bits (139), Expect = 2e-13
 Identities = 56/246 (22%), Positives = 102/246 (41%), Gaps = 20/246 (8%)

Query: 50  PVERVVSNYGLIPPIIYLFGEGDKIVAGRGVMGADEFIDAVDPEFKTRS-KDIKSDNVEE 108
           P +R+++       ++Y  G G+ IVA      A ++ D  +   K  S        +E 
Sbjct: 4   PAKRIIALSPHAVEMLYAIGAGEAIVA------ATDYADYPEAAKKIPSIGGYYGIQIER 57

Query: 109 IKSLNPDVIFAPSWGSQQGQYPQLKSLGIPVVFIDIETASNYYKTIEMMGEVFQKEAYAQ 168
           +  LNPD++     G++     QLKSLG  +     +T  +  K IE +G++      A 
Sbjct: 58  VLELNPDLVVVWDTGNKAEDINQLKSLGFKLYSSSPQTLEDVAKEIEELGQLTGHVELAN 117

Query: 169 ELIDYYNQSTNDVLKRTASISENEKPRVLFLVYDQRKNSYWTPGGEFYQNNLITMAGGKT 228
           ++   Y +    +    A+ SE   P+V + ++        T     +   +I +  GK 
Sbjct: 118 QVATDYRRELLRLRNENAAKSE---PKVFYQLW---STPLMTVAKNSWIQQIIGVCHGKN 171

Query: 229 VSSDLPTGKAQINVEQAASWNPDVIITSAHTMEYPSTKVKEDVLTDEGWKEINAVKSGNV 288
           V  D  +   Q+++E      P+VI+ S           ++       W EI AVK+ ++
Sbjct: 172 VFYDAASDYPQVSLENVLLTLPEVILQSEEEGNVKGIDWRK-------WTEIPAVKNQHI 224

Query: 289 YAMPFD 294
           Y +  D
Sbjct: 225 YQLNAD 230