Pairwise Alignments

Query, 353 a.a., ABC transporter substrate-binding protein from Methanococcus maripaludis S2

Subject, 278 a.a., periplasmic binding protein (RefSeq) from Dinoroseobacter shibae DFL-12

 Score = 43.5 bits (101), Expect = 7e-09
 Identities = 45/207 (21%), Positives = 81/207 (39%), Gaps = 13/207 (6%)

Query: 52  ERVVSNYGLIPPIIYLFGEGDKIVAGRGVMGADEFIDAVDPEFKTRSKDI---KSDNVEE 108
           +RV++  G I  I+Y  GE  ++V      G D    +V P       D+   ++ + E 
Sbjct: 20  DRVLAIGGAITEIVYALGEDARLV------GRDT--TSVFPPEAEALPDVGYMRALSPEG 71

Query: 109 IKSLNPDVIFAPSWGSQQGQYPQLKSLGIPVVFIDIET-ASNYYKTIEMMGEVFQKEAYA 167
           + SL PD+I A            L S  +P+V +  +  A      I  + +        
Sbjct: 72  VLSLAPDLIIADEGAGPAEALDVLTSARVPIVMVPNQPDAEGLVSKIMTISDALGVPERG 131

Query: 168 QELIDYYNQSTNDVLKRTASISENEKPRVLFLVYDQRKNSYWTPGGEFYQNNLITMAGGK 227
            EL +           R A +S+ + P+ +  +   +       G +     +IT+AGG 
Sbjct: 132 AELAEAVKSDLEKARARVAELSDGDDPKRVLFILSTQGGRILASGTDTAAAAMITLAGGV 191

Query: 228 TVSSDLPTGKAQINVEQAASWNPDVII 254
             ++    G   +N E   +  PD+I+
Sbjct: 192 NANTGF-EGYKPLNDEAVTALAPDLIL 217