Pairwise Alignments

Query, 353 a.a., ABC transporter substrate-binding protein from Methanococcus maripaludis S2

Subject, 274 a.a., periplasmic binding protein (RefSeq) from Shewanella sp. ANA-3

 Score = 58.2 bits (139), Expect = 3e-13
 Identities = 55/246 (22%), Positives = 102/246 (41%), Gaps = 20/246 (8%)

Query: 50  PVERVVSNYGLIPPIIYLFGEGDKIVAGRGVMGADEFIDAVDPEFKTRS-KDIKSDNVEE 108
           P +R+++       ++Y  G G+ IVA      A ++ D  +   K  S        +E 
Sbjct: 24  PAKRIIALSPHAVEMLYAIGAGESIVA------ATDYADYPEAAKKIPSIGGYYGIQIER 77

Query: 109 IKSLNPDVIFAPSWGSQQGQYPQLKSLGIPVVFIDIETASNYYKTIEMMGEVFQKEAYAQ 168
           +  LNPD+I     G++     QLK+LG  +     +T  +  K IE +GE+      A 
Sbjct: 78  VLELNPDLIVVWDTGNKAEDINQLKNLGFKLYSSSPKTLEDVAKEIEELGELTGHTEQAS 137

Query: 169 ELIDYYNQSTNDVLKRTASISENEKPRVLFLVYDQRKNSYWTPGGEFYQNNLITMAGGKT 228
            +   Y    +++L+  +  +   +P+V + ++        T     +   +I +  GK 
Sbjct: 138 RVAADYR---SELLRLRSENAAKSEPKVFYQLW---STPLMTVAKNSWIQQIIGVCHGKN 191

Query: 229 VSSDLPTGKAQINVEQAASWNPDVIITSAHTMEYPSTKVKEDVLTDEGWKEINAVKSGNV 288
           V  D  +   Q+++E      P+VI+ S            +       W EI AVK+ ++
Sbjct: 192 VFYDAASDYPQVSLENVLLTLPEVILQSEEEGNVKGVDWSQ-------WAEIPAVKNQHI 244

Query: 289 YAMPFD 294
           Y +  D
Sbjct: 245 YQLNAD 250