Pairwise Alignments

Query, 352 a.a., hypothetical protein from Methanococcus maripaludis S2

Subject, 341 a.a., hypothetical protein from Methanococcus maripaludis JJ

 Score =  425 bits (1093), Expect = e-124
 Identities = 213/354 (60%), Positives = 264/354 (74%), Gaps = 15/354 (4%)

Query: 1   MKKFLVGFILFSMVFSVIPGAVAIECYGLYAGQDEYVGTVTIDVVGDILNFNYETIPGWR 60
           MKKFLVGFILFSM+FSVIPGAVAI+ Y + AGQ+E VGT+T++VVGD L FNY+    W 
Sbjct: 1   MKKFLVGFILFSMIFSVIPGAVAID-YDIIAGQNEKVGTLTLNVVGDTLYFNYDINSPWE 59

Query: 61  ISEIHLMALNESPN-DNSSSWYTKGYITKTGNPKVGQFEIKEYFEPCVNEYCGTLNLTEI 119
           + E+HL ALNE P  D S+ WYT+GY+TKTGNPKVGQFEI E F+P + EY G+LN++E+
Sbjct: 60  LCEVHLAALNEVPEADTSNVWYTEGYLTKTGNPKVGQFEINEEFDPYLTEYSGSLNISEL 119

Query: 120 GVDPYDKLYVAAHAVVCECNRERIFAGFGYEAVNDFWAVNYSNYTEGIRKGGDE-RYNAS 178
           G      + +AAHAVVC+   E I   +GYE ++  WA+NYSNY  G     +  RYN  
Sbjct: 120 GSS---NITIAAHAVVCKQGDEII--DYGYEPLDYPWAINYSNYINGSPDSTESWRYNPL 174

Query: 179 LCLGKADTVSKTTNTFTCMGQGGSMVVYFNGGICGDGNNSTPDLEIYEVTYDHTANYYET 238
           LCLG+ D+  + T TFT +G GGS+ + F+G ICGDG+NSTPDLEIYEVTY+   N+ E+
Sbjct: 175 LCLGENDSSDQGTKTFTSLGHGGSIELCFDGSICGDGDNSTPDLEIYEVTYNQNPNWVES 234

Query: 239 ISIEVFYNGSYYPVGNVTNHDGDGTFNDHIFINCIYDLPSGVCIEKIRINEISTNNGDYD 298
           I IE ++NG+YYPVGN TN+ G      ++FIN IYDLPSGVCIEKIRIN+  + + DYD
Sbjct: 235 IGIEAYFNGNYYPVGNATNNLGSTAGVTNMFINRIYDLPSGVCIEKIRINDTFSTH-DYD 293

Query: 299 LDAIKANYKCVPEYEYVCNYTGNCESAWANDTCFGGETFPGNNWATYVIYPECD 352
           +DA+KANY+CVP Y  +      CESAWANDTCFGGETFP NNWATYVIYPECD
Sbjct: 294 IDAVKANYECVPIYNCI------CESAWANDTCFGGETFPENNWATYVIYPECD 341