Pairwise Alignments

Query, 788 a.a., CDC48 family AAA ATPase from Methanococcus maripaludis S2

Subject, 636 a.a., Cell division protein FtsH (EC 3.4.24.-) from Pseudomonas fluorescens FW300-N2E2

 Score =  199 bits (507), Expect = 3e-55
 Identities = 111/282 (39%), Positives = 167/282 (59%), Gaps = 20/282 (7%)

Query: 507 SDVGGLEDIKQDLKEAVEWPIKNKEMFERMGIRPPKGVLLFGPPGTGKTLLAKAVANESE 566
           +DV G ++ K+++ E VE+ +++   F+R+G R P+GVL+ GPPGTGKTLLAKA+A E++
Sbjct: 154 ADVAGCDEAKEEVGELVEF-LRDPGKFQRLGGRIPRGVLMVGPPGTGKTLLAKAIAGEAK 212

Query: 567 ANFISVKGPEIFSKWVGESEKAIREIFRKARQAAPTVIFFDEIDSVAPKRGMDFGSS-GV 625
             F ++ G +    +VG     +R++F +A++ AP +IF DEID+V   RG   G     
Sbjct: 213 VPFFTISGSDFVEMFVGVGASRVRDMFEQAKKHAPCIIFIDEIDAVGRHRGAGMGGGHDE 272

Query: 626 TEKVVNQLLTELDGLEEPKDVVIIAATNRPDILDQALLRPGRLDRIVLVPIPNETARLEI 685
            E+ +NQLL E+DG E    +++IAATNRPD+LD ALLRPGR DR V+V +P+   R +I
Sbjct: 273 REQTLNQLLVEMDGFEMNDGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDIRGREQI 332

Query: 686 FKVHTKGMPIGKDVNLEKLAKETKGYTGADIEAVCREAAMIALRENINSEHVESRHFDGA 745
            KVH + +P+G DV    +A+ T G++GAD+  +  EA++ A R       VE + F+ A
Sbjct: 333 LKVHMRKVPMGDDVAPAVIARGTPGFSGADLANLVNEASLFAAR--TGKRVVEMKEFELA 390

Query: 746 FKRIAPSVKDDDMDEYKDLAKEYGQNAGVSEIEKGPENTGYH 787
                           KD      +   +   EK  +NT YH
Sbjct: 391 ----------------KDKIMMGAERKSMVMSEKEKQNTAYH 416



 Score =  177 bits (450), Expect = 1e-48
 Identities = 95/228 (41%), Positives = 141/228 (61%), Gaps = 17/228 (7%)

Query: 166 LKETKVPNVTYEDIGGLKEEVKKIREMVELPMRYPELFDKLGIEPPKGVLLAGPPGTGKT 225
           L E +V   T  D+ G  E  +++ E+VE  +R P  F +LG   P+GVL+ GPPGTGKT
Sbjct: 144 LSEDQV-KTTLADVAGCDEAKEEVGELVEF-LRDPGKFQRLGGRIPRGVLMVGPPGTGKT 201

Query: 226 LLAKAVANEAGANFYTINGPEIMSKYVGETEENLRKIFEEAEENSPSIIFIDEIDAVAPK 285
           LLAKA+A EA   F+TI+G + +  +VG     +R +FE+A++++P IIFIDEIDAV   
Sbjct: 202 LLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKHAPCIIFIDEIDAVGRH 261

Query: 286 RDEASG---EVERRMVAQLLTLMDGLESRGQLVILAATNRPDSIDMALRRPGRLDREITI 342
           R    G   +   + + QLL  MDG E    ++++AATNRPD +D AL RPGR DR++ +
Sbjct: 262 RGAGMGGGHDEREQTLNQLLVEMDGFEMNDGIIVIAATNRPDVLDPALLRPGRFDRQVVV 321

Query: 343 GIPDRHGRNEILQIHTRNMPL------------QPDYEKSDVISILNE 378
           G+PD  GR +IL++H R +P+             P +  +D+ +++NE
Sbjct: 322 GLPDIRGREQILKVHMRKVPMGDDVAPAVIARGTPGFSGADLANLVNE 369