Pairwise Alignments

Query, 788 a.a., CDC48 family AAA ATPase from Methanococcus maripaludis S2

Subject, 639 a.a., ATP-dependent metalloprotease FtsH from Pseudomonas stutzeri RCH2

 Score =  201 bits (512), Expect = 8e-56
 Identities = 109/267 (40%), Positives = 166/267 (62%), Gaps = 4/267 (1%)

Query: 484 GGLKEVEPSALREVLVEVPNIKWSDVGGLEDIKQDLKEAVEWPIKNKEMFERMGIRPPKG 543
           GG      S  R +  +     ++DV G ++ K+++ E VE+ +++   F+R+G R P+G
Sbjct: 134 GGPMSFGKSKARLLSEDQVKTTFADVAGCDEAKEEVHELVEF-LRDPGKFQRLGGRIPRG 192

Query: 544 VLLFGPPGTGKTLLAKAVANESEANFISVKGPEIFSKWVGESEKAIREIFRKARQAAPTV 603
           VL+ GPPGTGKTLLAKA+A E++  F ++ G +    +VG     +R++F +A++ AP +
Sbjct: 193 VLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKHAPCI 252

Query: 604 IFFDEIDSVAPKRGMDFGSS-GVTEKVVNQLLTELDGLEEPKDVVIIAATNRPDILDQAL 662
           IF DEID+V   RG   G      E+ +NQLL E+DG E    +++IAATNRPD+LD AL
Sbjct: 253 IFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFEMNDGIIVIAATNRPDVLDPAL 312

Query: 663 LRPGRLDRIVLVPIPNETARLEIFKVHTKGMPIGKDVNLEKLAKETKGYTGADIEAVCRE 722
           LRPGR DR V+V +P+   R +I KVH + +PI ++V    +A+ T G++GAD+  +  E
Sbjct: 313 LRPGRFDRQVVVGLPDIRGREQILKVHMRKVPISENVEPAVIARGTPGFSGADLANLVNE 372

Query: 723 AAMIALRENINSEHVESRHFDGAFKRI 749
           A++ A R   N   VE R F+ A  +I
Sbjct: 373 ASLFAARS--NKRIVEMREFELAKDKI 397



 Score =  184 bits (466), Expect = 2e-50
 Identities = 108/271 (39%), Positives = 158/271 (58%), Gaps = 16/271 (5%)

Query: 166 LKETKVPNVTYEDIGGLKEEVKKIREMVELPMRYPELFDKLGIEPPKGVLLAGPPGTGKT 225
           L E +V   T+ D+ G  E  +++ E+VE  +R P  F +LG   P+GVL+ GPPGTGKT
Sbjct: 147 LSEDQV-KTTFADVAGCDEAKEEVHELVEF-LRDPGKFQRLGGRIPRGVLMVGPPGTGKT 204

Query: 226 LLAKAVANEAGANFYTINGPEIMSKYVGETEENLRKIFEEAEENSPSIIFIDEIDAVAPK 285
           LLAKA+A EA   F+TI+G + +  +VG     +R +FE+A++++P IIFIDEIDAV   
Sbjct: 205 LLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKHAPCIIFIDEIDAVGRH 264

Query: 286 RDEASG---EVERRMVAQLLTLMDGLESRGQLVILAATNRPDSIDMALRRPGRLDREITI 342
           R    G   +   + + QLL  MDG E    ++++AATNRPD +D AL RPGR DR++ +
Sbjct: 265 RGAGLGGGHDEREQTLNQLLVEMDGFEMNDGIIVIAATNRPDVLDPALLRPGRFDRQVVV 324

Query: 343 GIPDRHGRNEILQIHTRNMPLQPDYEKSDVI--------SILNELVGEYDRSKIESLVKL 394
           G+PD  GR +IL++H R +P+  + E + +         + L  LV E       S  ++
Sbjct: 325 GLPDIRGREQILKVHMRKVPISENVEPAVIARGTPGFSGADLANLVNEASLFAARSNKRI 384

Query: 395 VEKASSEEEIEKILKDGEVEDKV---KVKLN 422
           VE    E   +KI+   E +  V   K KLN
Sbjct: 385 VEMREFELAKDKIMMGAERKSMVMSEKEKLN 415