Pairwise Alignments

Query, 788 a.a., CDC48 family AAA ATPase from Methanococcus maripaludis S2

Subject, 615 a.a., ATP-dependent metalloprotease FtsH from Pseudomonas stutzeri RCH2

 Score =  210 bits (535), Expect = 2e-58
 Identities = 114/268 (42%), Positives = 168/268 (62%), Gaps = 5/268 (1%)

Query: 484 GGLKEVEPSALREVLVEVPNIKWSDVGGLEDIKQDLKEAVEWPIKNKEMFERMGIRPPKG 543
           GG+ ++  S  R  +     + ++DV G+++ K +LKE +E+ +++ + + R+G R PKG
Sbjct: 134 GGMMQIGKSKARVYVETDMKVSFADVAGVDEAKDELKEIIEF-LRDPQTYGRLGGRMPKG 192

Query: 544 VLLFGPPGTGKTLLAKAVANESEANFISVKGPEIFSKWVGESEKAIREIFRKARQAAPTV 603
           VLL GPPGTGKTLLA+AVA E++  F S+ G E    +VG     +R++F +AR  AP +
Sbjct: 193 VLLVGPPGTGKTLLARAVAGEAKVPFFSISGSEFVEMFVGVGAARVRDLFEQARAQAPAI 252

Query: 604 IFFDEIDSVAPKRGMDFGSSGVTEK--VVNQLLTELDGLEEPKDVVIIAATNRPDILDQA 661
           IF DE+D++   RG    S G  EK   +NQLL E+DG +    +V++AATNRP+ILD A
Sbjct: 253 IFIDELDALGRARGAGPLSGGHDEKEQTLNQLLVEMDGFDTSSGLVLLAATNRPEILDPA 312

Query: 662 LLRPGRLDRIVLVPIPNETARLEIFKVHTKGMPIGKDVNLEKLAKETKGYTGADIEAVCR 721
           LLR GR DR VLV  P++  R++I  VH K   +G DV+ + +A  T G+TGAD+  +  
Sbjct: 313 LLRAGRFDRQVLVDRPDKVGRVQILNVHLKKSRLGTDVDPQAIAALTPGFTGADLANLVN 372

Query: 722 EAAMIALRENINSEHVESRHFDGAFKRI 749
           EA ++A R   N+E V    F  A +RI
Sbjct: 373 EATLLATRR--NAEAVAMEDFTAAIERI 398



 Score =  163 bits (412), Expect = 3e-44
 Identities = 87/232 (37%), Positives = 138/232 (59%), Gaps = 5/232 (2%)

Query: 174 VTYEDIGGLKEEVKKIREMVELPMRYPELFDKLGIEPPKGVLLAGPPGTGKTLLAKAVAN 233
           V++ D+ G+ E   +++E++E  +R P+ + +LG   PKGVLL GPPGTGKTLLA+AVA 
Sbjct: 154 VSFADVAGVDEAKDELKEIIEF-LRDPQTYGRLGGRMPKGVLLVGPPGTGKTLLARAVAG 212

Query: 234 EAGANFYTINGPEIMSKYVGETEENLRKIFEEAEENSPSIIFIDEIDAVAPKRD----EA 289
           EA   F++I+G E +  +VG     +R +FE+A   +P+IIFIDE+DA+   R       
Sbjct: 213 EAKVPFFSISGSEFVEMFVGVGAARVRDLFEQARAQAPAIIFIDELDALGRARGAGPLSG 272

Query: 290 SGEVERRMVAQLLTLMDGLESRGQLVILAATNRPDSIDMALRRPGRLDREITIGIPDRHG 349
             + + + + QLL  MDG ++   LV+LAATNRP+ +D AL R GR DR++ +  PD+ G
Sbjct: 273 GHDEKEQTLNQLLVEMDGFDTSSGLVLLAATNRPEILDPALLRAGRFDRQVLVDRPDKVG 332

Query: 350 RNEILQIHTRNMPLQPDYEKSDVISILNELVGEYDRSKIESLVKLVEKASSE 401
           R +IL +H +   L  D +   + ++     G    + +     L  + ++E
Sbjct: 333 RVQILNVHLKKSRLGTDVDPQAIAALTPGFTGADLANLVNEATLLATRRNAE 384