Pairwise Alignments

Query, 788 a.a., CDC48 family AAA ATPase from Methanococcus maripaludis S2

Subject, 634 a.a., membrane protease FtsH catalytic subunit from Pseudomonas syringae pv. syringae B728a

 Score =  201 bits (511), Expect = 1e-55
 Identities = 104/244 (42%), Positives = 160/244 (65%), Gaps = 4/244 (1%)

Query: 507 SDVGGLEDIKQDLKEAVEWPIKNKEMFERMGIRPPKGVLLFGPPGTGKTLLAKAVANESE 566
           +DV G ++ K+++ E VE+ +++   F+R+G R P+GVL+ GPPGTGKTL+AKA+A E++
Sbjct: 154 ADVAGCDEAKEEVGELVEF-LRDPGKFQRLGGRIPRGVLMVGPPGTGKTLIAKAIAGEAK 212

Query: 567 ANFISVKGPEIFSKWVGESEKAIREIFRKARQAAPTVIFFDEIDSVAPKRGMDFGSS-GV 625
             F ++ G +    +VG     +R++F +A++ AP +IF DEID+V   RG   G     
Sbjct: 213 VPFFTISGSDFVEMFVGVGASRVRDMFEQAKKHAPCIIFIDEIDAVGRHRGAGMGGGHDE 272

Query: 626 TEKVVNQLLTELDGLEEPKDVVIIAATNRPDILDQALLRPGRLDRIVLVPIPNETARLEI 685
            E+ +NQLL E+DG E    +++IAATNRPD+LD ALLRPGR DR V+V +P+   R +I
Sbjct: 273 REQTLNQLLVEMDGFEMNDGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDIRGREQI 332

Query: 686 FKVHTKGMPIGKDVNLEKLAKETKGYTGADIEAVCREAAMIALRENINSEHVESRHFDGA 745
            KVH + +P+G+DVN   +A+ T G++GAD+  +  EA++ A R       VE + F+ A
Sbjct: 333 LKVHMRKVPMGEDVNPGVIARGTPGFSGADLANLVNEASLFAARS--GKRVVEMKEFELA 390

Query: 746 FKRI 749
             +I
Sbjct: 391 KDKI 394



 Score =  177 bits (450), Expect = 1e-48
 Identities = 103/263 (39%), Positives = 151/263 (57%), Gaps = 13/263 (4%)

Query: 166 LKETKVPNVTYEDIGGLKEEVKKIREMVELPMRYPELFDKLGIEPPKGVLLAGPPGTGKT 225
           L E +V   T  D+ G  E  +++ E+VE  +R P  F +LG   P+GVL+ GPPGTGKT
Sbjct: 144 LSEDQV-KTTLADVAGCDEAKEEVGELVEF-LRDPGKFQRLGGRIPRGVLMVGPPGTGKT 201

Query: 226 LLAKAVANEAGANFYTINGPEIMSKYVGETEENLRKIFEEAEENSPSIIFIDEIDAVAPK 285
           L+AKA+A EA   F+TI+G + +  +VG     +R +FE+A++++P IIFIDEIDAV   
Sbjct: 202 LIAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKHAPCIIFIDEIDAVGRH 261

Query: 286 RDEASG---EVERRMVAQLLTLMDGLESRGQLVILAATNRPDSIDMALRRPGRLDREITI 342
           R    G   +   + + QLL  MDG E    ++++AATNRPD +D AL RPGR DR++ +
Sbjct: 262 RGAGMGGGHDEREQTLNQLLVEMDGFEMNDGIIVIAATNRPDVLDPALLRPGRFDRQVVV 321

Query: 343 GIPDRHGRNEILQIHTRNMPLQPDYEKSDVI--------SILNELVGEYDRSKIESLVKL 394
           G+PD  GR +IL++H R +P+  D     +         + L  LV E       S  ++
Sbjct: 322 GLPDIRGREQILKVHMRKVPMGEDVNPGVIARGTPGFSGADLANLVNEASLFAARSGKRV 381

Query: 395 VEKASSEEEIEKILKDGEVEDKV 417
           VE    E   +KI+   E +  V
Sbjct: 382 VEMKEFELAKDKIMMGAERKSMV 404