Pairwise Alignments

Query, 788 a.a., CDC48 family AAA ATPase from Methanococcus maripaludis S2

Subject, 627 a.a., ATP-dependent zinc metalloprotease FtsH2 from Synechocystis sp000284455 PCC 6803

 Score =  208 bits (529), Expect = 8e-58
 Identities = 106/260 (40%), Positives = 164/260 (63%), Gaps = 4/260 (1%)

Query: 504 IKWSDVGGLEDIKQDLKEAVEWPIKNKEMFERMGIRPPKGVLLFGPPGTGKTLLAKAVAN 563
           + + DV G+++ K++L+E V + +K  E F  +G + PKGVLL GPPGTGKTLLAKA+A 
Sbjct: 169 VMFDDVAGIDEAKEELQEVVTF-LKQPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAG 227

Query: 564 ESEANFISVKGPEIFSKWVGESEKAIREIFRKARQAAPTVIFFDEIDSVAPKRGMDFGSS 623
           E+   F S+ G E    +VG     +R++F+KA++ AP +IF DEID+V  +RG   G  
Sbjct: 228 EAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCLIFIDEIDAVGRQRGAGIGGG 287

Query: 624 G-VTEKVVNQLLTELDGLEEPKDVVIIAATNRPDILDQALLRPGRLDRIVLVPIPNETAR 682
               E+ +NQLLTE+DG E    ++IIAATNRPD+LD AL+RPGR DR V+V  P+ + R
Sbjct: 288 NDEREQTLNQLLTEMDGFEGNTGIIIIAATNRPDVLDSALMRPGRFDRQVMVDAPDYSGR 347

Query: 683 LEIFKVHTKGMPIGKDVNLEKLAKETKGYTGADIEAVCREAAMIALRENINSEHVESRHF 742
            EI +VH +   +  +V+++ +A+ T G++GAD+  +  EAA++  R   ++  +     
Sbjct: 348 KEILEVHARNKKLAPEVSIDSIARRTPGFSGADLANLLNEAAILTARRRKSA--ITLLEI 405

Query: 743 DGAFKRIAPSVKDDDMDEYK 762
           D A  R+   ++   + + K
Sbjct: 406 DDAVDRVVAGMEGTPLVDSK 425



 Score =  188 bits (477), Expect = 9e-52
 Identities = 97/220 (44%), Positives = 142/220 (64%), Gaps = 16/220 (7%)

Query: 174 VTYEDIGGLKEEVKKIREMVELPMRYPELFDKLGIEPPKGVLLAGPPGTGKTLLAKAVAN 233
           V ++D+ G+ E  ++++E+V   ++ PE F  +G + PKGVLL GPPGTGKTLLAKA+A 
Sbjct: 169 VMFDDVAGIDEAKEELQEVVTF-LKQPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAG 227

Query: 234 EAGANFYTINGPEIMSKYVGETEENLRKIFEEAEENSPSIIFIDEIDAVAPKRDEASG-- 291
           EAG  F++I+G E +  +VG     +R +F++A+EN+P +IFIDEIDAV  +R    G  
Sbjct: 228 EAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCLIFIDEIDAVGRQRGAGIGGG 287

Query: 292 -EVERRMVAQLLTLMDGLESRGQLVILAATNRPDSIDMALRRPGRLDREITIGIPDRHGR 350
            +   + + QLLT MDG E    ++I+AATNRPD +D AL RPGR DR++ +  PD  GR
Sbjct: 288 NDEREQTLNQLLTEMDGFEGNTGIIIIAATNRPDVLDSALMRPGRFDRQVMVDAPDYSGR 347

Query: 351 NEILQIHTRNMPLQPD------------YEKSDVISILNE 378
            EIL++H RN  L P+            +  +D+ ++LNE
Sbjct: 348 KEILEVHARNKKLAPEVSIDSIARRTPGFSGADLANLLNE 387