Pairwise Alignments

Query, 788 a.a., CDC48 family AAA ATPase from Methanococcus maripaludis S2

Subject, 628 a.a., ATP-dependent zinc metalloprotease FtsH4 from Synechocystis sp000284455 PCC 6803

 Score =  191 bits (484), Expect = 1e-52
 Identities = 102/254 (40%), Positives = 156/254 (61%), Gaps = 6/254 (2%)

Query: 504 IKWSDVGGLEDIKQDLKEAVEWPIKNKEMFERMGIRPPKGVLLFGPPGTGKTLLAKAVAN 563
           + + DV G+E+ K +L E V++ +K  + +  +G + PKGVLL GPPGTGKTLLAKA A 
Sbjct: 171 VTFDDVAGVEEAKTELSEVVDF-LKFPQRYTALGAKIPKGVLLVGPPGTGKTLLAKAAAG 229

Query: 564 ESEANFISVKGPEIFSKWVGESEKAIREIFRKARQAAPTVIFFDEIDSVAPKR--GMDFG 621
           E+   F  + G E    +VG     +R++F +A++ AP ++F DE+D++   R  G   G
Sbjct: 230 EAGVPFFIISGSEFVELFVGAGAARVRDLFEQAKKQAPCIVFIDELDAIGKSRASGAFMG 289

Query: 622 SSGVTEKVVNQLLTELDGLEEP-KDVVIIAATNRPDILDQALLRPGRLDRIVLVPIPNET 680
            +   E+ +NQLLTE+DG       V+++AATNRP+ LD ALLRPGR DR VLV  P+  
Sbjct: 290 GNDEREQTLNQLLTEMDGFSAAGATVIVLAATNRPETLDPALLRPGRFDRQVLVDRPDLA 349

Query: 681 ARLEIFKVHTKGMPIGKDVNLEKLAKETKGYTGADIEAVCREAAMIALRENINSEHVESR 740
            RL+I +++ K + + K+V L+ +A  T G+ GAD+  +  EAA++A R   +S  V   
Sbjct: 350 GRLKILEIYAKKIKLDKEVELKNIATRTPGFAGADLANLVNEAALLAARNKQDS--VTEA 407

Query: 741 HFDGAFKRIAPSVK 754
            F  A +R+   ++
Sbjct: 408 DFREAIERVVAGLE 421



 Score =  176 bits (446), Expect = 3e-48
 Identities = 101/261 (38%), Positives = 161/261 (61%), Gaps = 22/261 (8%)

Query: 174 VTYEDIGGLKEEVKKIREMVELPMRYPELFDKLGIEPPKGVLLAGPPGTGKTLLAKAVAN 233
           VT++D+ G++E   ++ E+V+  +++P+ +  LG + PKGVLL GPPGTGKTLLAKA A 
Sbjct: 171 VTFDDVAGVEEAKTELSEVVDF-LKFPQRYTALGAKIPKGVLLVGPPGTGKTLLAKAAAG 229

Query: 234 EAGANFYTINGPEIMSKYVGETEENLRKIFEEAEENSPSIIFIDEIDAVAPKRDEAS--- 290
           EAG  F+ I+G E +  +VG     +R +FE+A++ +P I+FIDE+DA+   R   +   
Sbjct: 230 EAGVPFFIISGSEFVELFVGAGAARVRDLFEQAKKQAPCIVFIDELDAIGKSRASGAFMG 289

Query: 291 GEVER-RMVAQLLTLMDGLESRG-QLVILAATNRPDSIDMALRRPGRLDREITIGIPDRH 348
           G  ER + + QLLT MDG  + G  +++LAATNRP+++D AL RPGR DR++ +  PD  
Sbjct: 290 GNDEREQTLNQLLTEMDGFSAAGATVIVLAATNRPETLDPALLRPGRFDRQVLVDRPDLA 349

Query: 349 GRNEILQIHTRNMPLQ------------PDYEKSDVISILNELVGEYDRSKIESLVKLVE 396
           GR +IL+I+ + + L             P +  +D+ +++NE      R+K +S    V 
Sbjct: 350 GRLKILEIYAKKIKLDKEVELKNIATRTPGFAGADLANLVNEAALLAARNKQDS----VT 405

Query: 397 KASSEEEIEKILKDGEVEDKV 417
           +A   E IE+++   E + +V
Sbjct: 406 EADFREAIERVVAGLEKKSRV 426