Pairwise Alignments

Query, 788 a.a., CDC48 family AAA ATPase from Methanococcus maripaludis S2

Subject, 665 a.a., ATP-dependent zinc metalloprotease FtsH1 from Synechocystis sp000284455 PCC 6803

 Score =  202 bits (515), Expect = 4e-56
 Identities = 105/260 (40%), Positives = 159/260 (61%), Gaps = 4/260 (1%)

Query: 504 IKWSDVGGLEDIKQDLKEAVEWPIKNKEMFERMGIRPPKGVLLFGPPGTGKTLLAKAVAN 563
           + + DV G+++ K++L+E V + +K  E F  +G + P+GVLL GPPGTGKTLLAKA+A 
Sbjct: 208 VGFDDVAGIDEAKEELQEVVTF-LKQPEKFTAIGAKIPRGVLLIGPPGTGKTLLAKAIAG 266

Query: 564 ESEANFISVKGPEIFSKWVGESEKAIREIFRKARQAAPTVIFFDEIDSVAPKRGMDFGSS 623
           E+   F S+ G E    +VG     +R++F+KA++ AP ++F DEID+V  +RG+ +G  
Sbjct: 267 EAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCLVFIDEIDAVGRQRGVGYGGG 326

Query: 624 G-VTEKVVNQLLTELDGLEEPKDVVIIAATNRPDILDQALLRPGRLDRIVLVPIPNETAR 682
               E+ +NQLLTE+DG E    +++IAATNRPD+LD ALLRPGR DR V V  P+   R
Sbjct: 327 NDEREQTLNQLLTEMDGFEGNSGIIVIAATNRPDVLDLALLRPGRFDRQVTVDYPDVQGR 386

Query: 683 LEIFKVHTKGMPIGKDVNLEKLAKETKGYTGADIEAVCREAAMIALRENINSEHVESRHF 742
             I  +H +   + ++V L  +A+ T G+TGAD+  V  EAA+   R     E +     
Sbjct: 387 ELILAIHAQNKKLHEEVQLAAIARRTPGFTGADLANVLNEAAIFTARR--RKEAITMAEV 444

Query: 743 DGAFKRIAPSVKDDDMDEYK 762
           + A  R+   ++   + + K
Sbjct: 445 NDAIDRVVAGMEGTPLVDSK 464



 Score =  183 bits (465), Expect = 2e-50
 Identities = 102/267 (38%), Positives = 159/267 (59%), Gaps = 20/267 (7%)

Query: 174 VTYEDIGGLKEEVKKIREMVELPMRYPELFDKLGIEPPKGVLLAGPPGTGKTLLAKAVAN 233
           V ++D+ G+ E  ++++E+V   ++ PE F  +G + P+GVLL GPPGTGKTLLAKA+A 
Sbjct: 208 VGFDDVAGIDEAKEELQEVVTF-LKQPEKFTAIGAKIPRGVLLIGPPGTGKTLLAKAIAG 266

Query: 234 EAGANFYTINGPEIMSKYVGETEENLRKIFEEAEENSPSIIFIDEIDAVAPKRDEASG-- 291
           EAG  F++I+G E +  +VG     +R +F++A+EN+P ++FIDEIDAV  +R    G  
Sbjct: 267 EAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCLVFIDEIDAVGRQRGVGYGGG 326

Query: 292 -EVERRMVAQLLTLMDGLESRGQLVILAATNRPDSIDMALRRPGRLDREITIGIPDRHGR 350
            +   + + QLLT MDG E    ++++AATNRPD +D+AL RPGR DR++T+  PD  GR
Sbjct: 327 NDEREQTLNQLLTEMDGFEGNSGIIVIAATNRPDVLDLALLRPGRFDRQVTVDYPDVQGR 386

Query: 351 NEILQIHTRNMPLQ------------PDYEKSDVISILNELVGEYDRSKIESLVKLVEKA 398
             IL IH +N  L             P +  +D+ ++LNE      R + E+    +  A
Sbjct: 387 ELILAIHAQNKKLHEEVQLAAIARRTPGFTGADLANVLNEAAIFTARRRKEA----ITMA 442

Query: 399 SSEEEIEKILKDGEVEDKVKVKLNQLM 425
              + I++++   E    V  K  +L+
Sbjct: 443 EVNDAIDRVVAGMEGTPLVDSKSKRLI 469