Pairwise Alignments

Query, 788 a.a., CDC48 family AAA ATPase from Methanococcus maripaludis S2

Subject, 616 a.a., ATP-dependent zinc metalloprotease FtsH3 from Synechocystis sp000284455 PCC 6803

 Score =  218 bits (555), Expect = 8e-61
 Identities = 115/268 (42%), Positives = 165/268 (61%), Gaps = 6/268 (2%)

Query: 504 IKWSDVGGLEDIKQDLKEAVEWPIKNKEMFERMGIRPPKGVLLFGPPGTGKTLLAKAVAN 563
           + + DV G+E  K +L E V++ +KN + F  +G + PKGVLL GPPGTGKTLLAKAVA 
Sbjct: 158 VTFGDVAGIEQAKLELTEVVDF-LKNADRFTELGAKIPKGVLLVGPPGTGKTLLAKAVAG 216

Query: 564 ESEANFISVKGPEIFSKWVGESEKAIREIFRKARQAAPTVIFFDEIDSVAPKRGMDFGSS 623
           E+   F S+ G E    +VG     +R++F +A+  AP ++F DEID+V  +RG   G  
Sbjct: 217 EAGVPFFSISGSEFVEMFVGVGASRVRDLFEQAKANAPCIVFIDEIDAVGRQRGAGLGGG 276

Query: 624 G-VTEKVVNQLLTELDGLEEPKDVVIIAATNRPDILDQALLRPGRLDRIVLVPIPNETAR 682
               E+ +NQLLTE+DG E    ++I+AATNRPD+LD AL+RPGR DR V+V  P+   R
Sbjct: 277 NDEREQTLNQLLTEMDGFEGNTGIIIVAATNRPDVLDSALMRPGRFDRQVVVDRPDYAGR 336

Query: 683 LEIFKVHTKGMPIGKDVNLEKLAKETKGYTGADIEAVCREAAMIALRENINSEHVESRHF 742
            EI  VH +G  + +DV+L+K+A+ T G+TGAD+  +  EAA++A R N+    +     
Sbjct: 337 REILNVHARGKTLSQDVDLDKIARRTPGFTGADLSNLLNEAAILAARRNLT--EISMDEV 394

Query: 743 DGAFKRI--APSVKDDDMDEYKDLAKEY 768
           + A  R+   P  K+  M E +     Y
Sbjct: 395 NDAIDRVLAGPEKKNRVMSEKRKTLVAY 422



 Score =  181 bits (460), Expect = 8e-50
 Identities = 110/294 (37%), Positives = 158/294 (53%), Gaps = 61/294 (20%)

Query: 174 VTYEDIGGLKEEVKKIREMVELPMRYPELFDKLGIEPPKGVLLAGPPGTGKTLLAKAVAN 233
           VT+ D+ G+++   ++ E+V+  ++  + F +LG + PKGVLL GPPGTGKTLLAKAVA 
Sbjct: 158 VTFGDVAGIEQAKLELTEVVDF-LKNADRFTELGAKIPKGVLLVGPPGTGKTLLAKAVAG 216

Query: 234 EAGANFYTINGPEIMSKYVGETEENLRKIFEEAEENSPSIIFIDEIDAVAPKRDEASG-- 291
           EAG  F++I+G E +  +VG     +R +FE+A+ N+P I+FIDEIDAV  +R    G  
Sbjct: 217 EAGVPFFSISGSEFVEMFVGVGASRVRDLFEQAKANAPCIVFIDEIDAVGRQRGAGLGGG 276

Query: 292 -EVERRMVAQLLTLMDGLESRGQLVILAATNRPDSIDMALRRPGRLDREITIGIPDRHGR 350
            +   + + QLLT MDG E    ++I+AATNRPD +D AL RPGR DR++ +  PD  GR
Sbjct: 277 NDEREQTLNQLLTEMDGFEGNTGIIIVAATNRPDVLDSALMRPGRFDRQVVVDRPDYAGR 336

Query: 351 NEILQIHTRNMPLQPDYEKSDVISILNELVGEYDRSKIESLVKLVEKASSEEEIEKILKD 410
            EIL +H R   L                                   S + +++KI   
Sbjct: 337 REILNVHARGKTL-----------------------------------SQDVDLDKI--- 358

Query: 411 GEVEDKVKVKLNQLMVKELADKTHGFAGADLAALSKEAAMKTLRRFLPDIDLEK 464
                              A +T GF GADL+ L  EAA+   RR L +I +++
Sbjct: 359 -------------------ARRTPGFTGADLSNLLNEAAILAARRNLTEISMDE 393