Pairwise Alignments

Query, 788 a.a., CDC48 family AAA ATPase from Methanococcus maripaludis S2

Subject, 623 a.a., FtsH-2 peptidase. Metallo peptidase. MEROPS family M41 from Synechococcus elongatus PCC 7942

 Score =  191 bits (484), Expect = 1e-52
 Identities = 100/227 (44%), Positives = 147/227 (64%), Gaps = 4/227 (1%)

Query: 506 WSDVGGLEDIKQDLKEAVEWPIKNKEMFERMGIRPPKGVLLFGPPGTGKTLLAKAVANES 565
           +SDV G+E+ K +L+E V++ +K  E +  +G R PKGVLL GPPGTGKTLLAKAVA E+
Sbjct: 168 FSDVAGVEEAKAELQEIVDF-LKTPERYLNIGARIPKGVLLVGPPGTGKTLLAKAVAGEA 226

Query: 566 EANFISVKGPEIFSKWVGESEKAIREIFRKARQAAPTVIFFDEIDSVAPKR--GMDFGSS 623
              F S+ G E    +VG     +R++F +A+Q AP ++F DE+D++   R  G   G +
Sbjct: 227 RVPFFSISGSEFVELFVGAGAARVRDLFEQAKQKAPCIVFIDELDAIGKSRASGNFMGGN 286

Query: 624 GVTEKVVNQLLTELDGLE-EPKDVVIIAATNRPDILDQALLRPGRLDRIVLVPIPNETAR 682
              E+ +NQLLTE+DG   +   V+++AATNRP+ LD ALLRPGR DR VLV  P+   R
Sbjct: 287 DEREQTLNQLLTEMDGFSADGATVIVLAATNRPETLDPALLRPGRFDRQVLVDRPDLAGR 346

Query: 683 LEIFKVHTKGMPIGKDVNLEKLAKETKGYTGADIEAVCREAAMIALR 729
             I  ++ + + +  +V+L+ +A  T G+ GAD+  +  EAA++A R
Sbjct: 347 KAILDIYGRKVKLDPEVDLQAIAVRTSGFAGADLANLINEAALLAAR 393



 Score =  173 bits (439), Expect = 2e-47
 Identities = 124/379 (32%), Positives = 201/379 (53%), Gaps = 41/379 (10%)

Query: 126 VVIGVLGTAFPFIVTGTTPKGPVKINEYTQIELKTEPVTELKETKVPNVTYEDIGGLKEE 185
           + IGVL     F        GP     +T+   K     E  +T+    T+ D+ G++E 
Sbjct: 127 IFIGVL----QFFAARQARNGPQGALSFTKSRAKV--YVEGDDTRT---TFSDVAGVEEA 177

Query: 186 VKKIREMVELPMRYPELFDKLGIEPPKGVLLAGPPGTGKTLLAKAVANEAGANFYTINGP 245
             +++E+V+  ++ PE +  +G   PKGVLL GPPGTGKTLLAKAVA EA   F++I+G 
Sbjct: 178 KAELQEIVDF-LKTPERYLNIGARIPKGVLLVGPPGTGKTLLAKAVAGEARVPFFSISGS 236

Query: 246 EIMSKYVGETEENLRKIFEEAEENSPSIIFIDEIDAVAPKRDEAS---GEVER-RMVAQL 301
           E +  +VG     +R +FE+A++ +P I+FIDE+DA+   R   +   G  ER + + QL
Sbjct: 237 EFVELFVGAGAARVRDLFEQAKQKAPCIVFIDELDAIGKSRASGNFMGGNDEREQTLNQL 296

Query: 302 LTLMDGLESRG-QLVILAATNRPDSIDMALRRPGRLDREITIGIPDRHGRNEILQIHTRN 360
           LT MDG  + G  +++LAATNRP+++D AL RPGR DR++ +  PD  GR  IL I+ R 
Sbjct: 297 LTEMDGFSADGATVIVLAATNRPETLDPALLRPGRFDRQVLVDRPDLAGRKAILDIYGRK 356

Query: 361 MPLQPD------------YEKSDVISILNE---LVGEYDRSKIESLVKLVEKASSEEEIE 405
           + L P+            +  +D+ +++NE   L     R++       V +A   E IE
Sbjct: 357 VKLDPEVDLQAIAVRTSGFAGADLANLINEAALLAARNGRTE-------VAQADLNEAIE 409

Query: 406 KILKDGEVEDKVKVKLNQLMVKELADKTHGFAGADLAALSKEAAMKTLRRFLPDIDLEKE 465
           +++   E + +V +  N+  +    +  H   GA +   SK A +  + R +  +     
Sbjct: 410 RVVAGLEKKSRV-LNDNEKRIVAYHEVGHAIVGALMPGGSKVAKISIVPRGMAALGYTL- 467

Query: 466 EIPREVLDKIKVTKEDFVG 484
           ++P E  D+  ++ E+  G
Sbjct: 468 QLPTE--DRFLLSAEELKG 484