Pairwise Alignments

Query, 788 a.a., CDC48 family AAA ATPase from Methanococcus maripaludis S2

Subject, 632 a.a., FtsH peptidase homologue, chloroplast. Metallo peptidase. MEROPS family M41 from Synechococcus elongatus PCC 7942

 Score =  215 bits (548), Expect = 5e-60
 Identities = 108/247 (43%), Positives = 162/247 (65%), Gaps = 4/247 (1%)

Query: 504 IKWSDVGGLEDIKQDLKEAVEWPIKNKEMFERMGIRPPKGVLLFGPPGTGKTLLAKAVAN 563
           + + DV G+E+ K++L+E V + +++ + F  +G R P+GVLL GPPGTGKTLLAKA+A 
Sbjct: 165 VMFEDVAGIEEAKEELQEVVSF-LRSSDRFTAVGARIPRGVLLVGPPGTGKTLLAKAIAG 223

Query: 564 ESEANFISVKGPEIFSKWVGESEKAIREIFRKARQAAPTVIFFDEIDSVAPKRGMDFGSS 623
           E+   F S+ G E    +VG     +R++FRKA++ +P ++F DEID+V  +RG   G  
Sbjct: 224 EAGVPFFSMSGSEFVEMFVGVGASRVRDLFRKAKENSPCIVFIDEIDAVGRQRGAGIGGG 283

Query: 624 G-VTEKVVNQLLTELDGLEEPKDVVIIAATNRPDILDQALLRPGRLDRIVLVPIPNETAR 682
               E+ +NQLLTE+DG EE   V+IIAATNRPD+LD ALLRPGR DR + V +P+   R
Sbjct: 284 NDEREQTLNQLLTEMDGFEENSGVIIIAATNRPDVLDSALLRPGRFDRQITVDLPSYNGR 343

Query: 683 LEIFKVHTKGMPIGKDVNLEKLAKETKGYTGADIEAVCREAAMIALRENINSEHVESRHF 742
           L I +VH +   + ++V+LE +A+ T G++GA++  +  EAA++  R N  +  V+    
Sbjct: 344 LGILQVHARNKKLAEEVSLEAIARRTPGFSGAELANLLNEAAILTARRNKTA--VDETDI 401

Query: 743 DGAFKRI 749
           D A  R+
Sbjct: 402 DDAIDRV 408



 Score =  182 bits (462), Expect = 5e-50
 Identities = 96/220 (43%), Positives = 140/220 (63%), Gaps = 16/220 (7%)

Query: 174 VTYEDIGGLKEEVKKIREMVELPMRYPELFDKLGIEPPKGVLLAGPPGTGKTLLAKAVAN 233
           V +ED+ G++E  ++++E+V   +R  + F  +G   P+GVLL GPPGTGKTLLAKA+A 
Sbjct: 165 VMFEDVAGIEEAKEELQEVVSF-LRSSDRFTAVGARIPRGVLLVGPPGTGKTLLAKAIAG 223

Query: 234 EAGANFYTINGPEIMSKYVGETEENLRKIFEEAEENSPSIIFIDEIDAVAPKRDEASG-- 291
           EAG  F++++G E +  +VG     +R +F +A+ENSP I+FIDEIDAV  +R    G  
Sbjct: 224 EAGVPFFSMSGSEFVEMFVGVGASRVRDLFRKAKENSPCIVFIDEIDAVGRQRGAGIGGG 283

Query: 292 -EVERRMVAQLLTLMDGLESRGQLVILAATNRPDSIDMALRRPGRLDREITIGIPDRHGR 350
            +   + + QLLT MDG E    ++I+AATNRPD +D AL RPGR DR+IT+ +P  +GR
Sbjct: 284 NDEREQTLNQLLTEMDGFEENSGVIIIAATNRPDVLDSALLRPGRFDRQITVDLPSYNGR 343

Query: 351 NEILQIHTRNMPL------------QPDYEKSDVISILNE 378
             ILQ+H RN  L             P +  +++ ++LNE
Sbjct: 344 LGILQVHARNKKLAEEVSLEAIARRTPGFSGAELANLLNE 383