Pairwise Alignments

Query, 788 a.a., CDC48 family AAA ATPase from Methanococcus maripaludis S2

Subject, 630 a.a., FtsH peptidase homologue, chloroplast. Metallo peptidase. MEROPS family M41 from Synechococcus elongatus PCC 7942

 Score =  216 bits (550), Expect = 3e-60
 Identities = 110/252 (43%), Positives = 160/252 (63%), Gaps = 4/252 (1%)

Query: 504 IKWSDVGGLEDIKQDLKEAVEWPIKNKEMFERMGIRPPKGVLLFGPPGTGKTLLAKAVAN 563
           + + DV G+E+ K++L+E V + +KN E F  +G R PKGVLL GPPGTGKTLLAKA+A 
Sbjct: 171 VLFDDVAGIEEAKEELQEVVTF-LKNSERFTAVGARIPKGVLLVGPPGTGKTLLAKAIAG 229

Query: 564 ESEANFISVKGPEIFSKWVGESEKAIREIFRKARQAAPTVIFFDEIDSVAPKRGMDFGSS 623
           E+   F S+ G E    +VG     +R++F+KA++ AP ++F DEID+V  +RG   G  
Sbjct: 230 EAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFIDEIDAVGRQRGAGIGGG 289

Query: 624 G-VTEKVVNQLLTELDGLEEPKDVVIIAATNRPDILDQALLRPGRLDRIVLVPIPNETAR 682
               E+ +NQLLTE+DG E    ++IIAATNRPD+LD AL RPGR DR ++V  P+   R
Sbjct: 290 NDEREQTLNQLLTEMDGFEGNTGIIIIAATNRPDVLDAALTRPGRFDRQIIVDAPDIKGR 349

Query: 683 LEIFKVHTKGMPIGKDVNLEKLAKETKGYTGADIEAVCREAAMIALRENINSEHVESRHF 742
           LEI KVH +   + +DV+L+ +A+ T G+ GAD+  +  EAA++  R     + +     
Sbjct: 350 LEILKVHARNKKLAEDVSLDVIARRTPGFAGADLANLLNEAAILTARR--RKDAITLTEI 407

Query: 743 DGAFKRIAPSVK 754
           D A  R+   ++
Sbjct: 408 DDAVDRVVAGME 419



 Score =  187 bits (475), Expect = 2e-51
 Identities = 104/267 (38%), Positives = 160/267 (59%), Gaps = 22/267 (8%)

Query: 127 VIGVLGTAFPFIVTGTTPKGPVKINEYTQIELKTEPVTELKETKVPNVTYEDIGGLKEEV 186
           ++ ++G  F F  +G  P GP +  ++ + + + +   +        V ++D+ G++E  
Sbjct: 130 ILLIVGLFFLFRRSGNVPGGPGQAMQFGKSKARFQMDAKT------GVLFDDVAGIEEAK 183

Query: 187 KKIREMVELPMRYPELFDKLGIEPPKGVLLAGPPGTGKTLLAKAVANEAGANFYTINGPE 246
           ++++E+V   ++  E F  +G   PKGVLL GPPGTGKTLLAKA+A EAG  F++I+G E
Sbjct: 184 EELQEVVTF-LKNSERFTAVGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSE 242

Query: 247 IMSKYVGETEENLRKIFEEAEENSPSIIFIDEIDAVAPKRDEASG---EVERRMVAQLLT 303
            +  +VG     +R +F++A+EN+P I+FIDEIDAV  +R    G   +   + + QLLT
Sbjct: 243 FVEMFVGVGASRVRDLFKKAKENAPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLT 302

Query: 304 LMDGLESRGQLVILAATNRPDSIDMALRRPGRLDREITIGIPDRHGRNEILQIHTRNMPL 363
            MDG E    ++I+AATNRPD +D AL RPGR DR+I +  PD  GR EIL++H RN  L
Sbjct: 303 EMDGFEGNTGIIIIAATNRPDVLDAALTRPGRFDRQIIVDAPDIKGRLEILKVHARNKKL 362

Query: 364 ------------QPDYEKSDVISILNE 378
                        P +  +D+ ++LNE
Sbjct: 363 AEDVSLDVIARRTPGFAGADLANLLNE 389