Pairwise Alignments

Query, 788 a.a., CDC48 family AAA ATPase from Methanococcus maripaludis S2

Subject, 613 a.a., FtsH peptidase homologue, chloroplast. Metallo peptidase. MEROPS family M41 from Synechococcus elongatus PCC 7942

 Score =  222 bits (565), Expect = 5e-62
 Identities = 115/268 (42%), Positives = 170/268 (63%), Gaps = 6/268 (2%)

Query: 504 IKWSDVGGLEDIKQDLKEAVEWPIKNKEMFERMGIRPPKGVLLFGPPGTGKTLLAKAVAN 563
           + ++DV G++  K +L E V++ +KN + F  +G + PKGVLL GPPGTGKTLLAKAVA 
Sbjct: 155 VTFNDVAGIDQAKLELTEVVDF-LKNADRFTAVGAQIPKGVLLVGPPGTGKTLLAKAVAG 213

Query: 564 ESEANFISVKGPEIFSKWVGESEKAIREIFRKARQAAPTVIFFDEIDSVAPKRGMDFGSS 623
           E+   F S+ G E    +VG     +R++F +A+ +AP ++F DEID+V  +RG   G  
Sbjct: 214 EAGVPFFSISGSEFVEMFVGVGASRVRDLFEQAKASAPCIVFIDEIDAVGRQRGAGLGGG 273

Query: 624 G-VTEKVVNQLLTELDGLEEPKDVVIIAATNRPDILDQALLRPGRLDRIVLVPIPNETAR 682
               E+ +NQLLTE+DG E    ++I+AATNRPD+LD AL+RPGR DR V+V  P+   R
Sbjct: 274 NDEREQTLNQLLTEMDGFEGNSGIIIVAATNRPDVLDAALMRPGRFDRQVVVDRPDYNGR 333

Query: 683 LEIFKVHTKGMPIGKDVNLEKLAKETKGYTGADIEAVCREAAMIALRENINSEHVESRHF 742
           LEI +VH +G  + KD++L+K+A+ T G+TGAD+  +  EAA++A R ++    +     
Sbjct: 334 LEILRVHARGKSLSKDIDLDKIARRTPGFTGADLSNLLNEAAILAARRSL--AEISMDEV 391

Query: 743 DGAFKRI--APSVKDDDMDEYKDLAKEY 768
           + A  R+   P  KD  M E + +   Y
Sbjct: 392 NDAIDRVLAGPEKKDRVMSEKRKVLVAY 419



 Score =  181 bits (458), Expect = 1e-49
 Identities = 104/281 (37%), Positives = 161/281 (57%), Gaps = 21/281 (7%)

Query: 174 VTYEDIGGLKEEVKKIREMVELPMRYPELFDKLGIEPPKGVLLAGPPGTGKTLLAKAVAN 233
           VT+ D+ G+ +   ++ E+V+  ++  + F  +G + PKGVLL GPPGTGKTLLAKAVA 
Sbjct: 155 VTFNDVAGIDQAKLELTEVVDF-LKNADRFTAVGAQIPKGVLLVGPPGTGKTLLAKAVAG 213

Query: 234 EAGANFYTINGPEIMSKYVGETEENLRKIFEEAEENSPSIIFIDEIDAVAPKRDEASG-- 291
           EAG  F++I+G E +  +VG     +R +FE+A+ ++P I+FIDEIDAV  +R    G  
Sbjct: 214 EAGVPFFSISGSEFVEMFVGVGASRVRDLFEQAKASAPCIVFIDEIDAVGRQRGAGLGGG 273

Query: 292 -EVERRMVAQLLTLMDGLESRGQLVILAATNRPDSIDMALRRPGRLDREITIGIPDRHGR 350
            +   + + QLLT MDG E    ++I+AATNRPD +D AL RPGR DR++ +  PD +GR
Sbjct: 274 NDEREQTLNQLLTEMDGFEGNSGIIIVAATNRPDVLDAALMRPGRFDRQVVVDRPDYNGR 333

Query: 351 NEILQIHTRNMPLQ------------PDYEKSDVISILNELVGEYDRSKIESLVKLVEKA 398
            EIL++H R   L             P +  +D+ ++LNE      R  +      +   
Sbjct: 334 LEILRVHARGKSLSKDIDLDKIARRTPGFTGADLSNLLNEAAILAARRSLAE----ISMD 389

Query: 399 SSEEEIEKILKDGEVEDKVKVKLNQLMVKELADKTHGFAGA 439
              + I+++L   E +D+V  +  +++V    +  H   GA
Sbjct: 390 EVNDAIDRVLAGPEKKDRVMSEKRKVLV-AYHEAGHALVGA 429