Pairwise Alignments

Query, 788 a.a., CDC48 family AAA ATPase from Methanococcus maripaludis S2

Subject, 645 a.a., metalloprotease transmembrane protein from Sinorhizobium meliloti 1021

 Score =  211 bits (536), Expect = 1e-58
 Identities = 104/229 (45%), Positives = 157/229 (68%), Gaps = 2/229 (0%)

Query: 504 IKWSDVGGLEDIKQDLKEAVEWPIKNKEMFERMGIRPPKGVLLFGPPGTGKTLLAKAVAN 563
           + + DV G+++ KQDL+E VE+ +++ + F+R+G R P+GVLL GPPGTGKTLLA++VA 
Sbjct: 155 VTFDDVAGVDEAKQDLEEIVEF-LRDPQKFQRLGGRIPRGVLLVGPPGTGKTLLARSVAG 213

Query: 564 ESEANFISVKGPEIFSKWVGESEKAIREIFRKARQAAPTVIFFDEIDSVAPKRGMDFGSS 623
           E+   F ++ G +    +VG     +R++F +A++ AP +IF DEID+V   RG   G  
Sbjct: 214 EANVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKNAPCIIFIDEIDAVGRHRGAGLGGG 273

Query: 624 G-VTEKVVNQLLTELDGLEEPKDVVIIAATNRPDILDQALLRPGRLDRIVLVPIPNETAR 682
               E+ +NQLL E+DG E  + +++IAATNRPD+LD ALLRPGR DR V+VP P+   R
Sbjct: 274 NDEREQTLNQLLVEMDGFEANEGIILIAATNRPDVLDPALLRPGRFDRQVVVPNPDINGR 333

Query: 683 LEIFKVHTKGMPIGKDVNLEKLAKETKGYTGADIEAVCREAAMIALREN 731
             I KVH + +P+  +V+L+ LA+ T G++GAD+  +  E+A++A R N
Sbjct: 334 ERILKVHVRNVPLAPNVDLKVLARGTPGFSGADLMNLVNESALMAARRN 382



 Score =  186 bits (473), Expect = 3e-51
 Identities = 123/359 (34%), Positives = 198/359 (55%), Gaps = 51/359 (14%)

Query: 80  VKITVVEVKEAKKITLAPMQAVRFSTGFESYVGSRLVEQVVDKGSKVVIGVLGTAFPFI- 138
           V   + E  EAK +T+        S+GF SY+G+ L           ++ +LG    F+ 
Sbjct: 79  VDTALTERLEAKDVTVTVRPETDGSSGFLSYIGTLLP----------MLLILGVWLFFMR 128

Query: 139 -VTGTTPKGPVKINEYTQIELKTEPVTELKETKVPNVTYEDIGGLKEEVKKIREMVELPM 197
            + G + +G +   +      K + +TE        VT++D+ G+ E  + + E+VE  +
Sbjct: 129 QMQGGS-RGAMGFGKS-----KAKLLTEAHG----RVTFDDVAGVDEAKQDLEEIVEF-L 177

Query: 198 RYPELFDKLGIEPPKGVLLAGPPGTGKTLLAKAVANEAGANFYTINGPEIMSKYVGETEE 257
           R P+ F +LG   P+GVLL GPPGTGKTLLA++VA EA   F+TI+G + +  +VG    
Sbjct: 178 RDPQKFQRLGGRIPRGVLLVGPPGTGKTLLARSVAGEANVPFFTISGSDFVEMFVGVGAS 237

Query: 258 NLRKIFEEAEENSPSIIFIDEIDAVAPKRDEASG---EVERRMVAQLLTLMDGLESRGQL 314
            +R +FE+A++N+P IIFIDEIDAV   R    G   +   + + QLL  MDG E+   +
Sbjct: 238 RVRDMFEQAKKNAPCIIFIDEIDAVGRHRGAGLGGGNDEREQTLNQLLVEMDGFEANEGI 297

Query: 315 VILAATNRPDSIDMALRRPGRLDREITIGIPDRHGRNEILQIHTRNMPLQPD-------- 366
           +++AATNRPD +D AL RPGR DR++ +  PD +GR  IL++H RN+PL P+        
Sbjct: 298 ILIAATNRPDVLDPALLRPGRFDRQVVVPNPDINGRERILKVHVRNVPLAPNVDLKVLAR 357

Query: 367 ----YEKSDVISILNE-------------LVGEYDRSKIESLVKLVEKASSEEEIEKIL 408
               +  +D+++++NE              + E++ +K + ++    ++S+  E EK L
Sbjct: 358 GTPGFSGADLMNLVNESALMAARRNKRLVTMQEFEDAKDKIMMGAERRSSAMTEAEKKL 416