Pairwise Alignments

Query, 788 a.a., CDC48 family AAA ATPase from Methanococcus maripaludis S2

Subject, 650 a.a., vesicle-fusing ATPase (RefSeq) from Shewanella amazonensis SB2B

 Score =  202 bits (514), Expect = 5e-56
 Identities = 98/227 (43%), Positives = 155/227 (68%), Gaps = 2/227 (0%)

Query: 506 WSDVGGLEDIKQDLKEAVEWPIKNKEMFERMGIRPPKGVLLFGPPGTGKTLLAKAVANES 565
           ++DV G ++ K+++KE V++ +++   F+++G R P GVL+ GPPGTGKTLLAKA+A E+
Sbjct: 156 FADVAGCDEAKEEVKEMVDY-LRDPTKFQKLGGRIPTGVLMVGPPGTGKTLLAKAIAGEA 214

Query: 566 EANFISVKGPEIFSKWVGESEKAIREIFRKARQAAPTVIFFDEIDSVAPKRGMDFGSS-G 624
           +  F ++ G +    +VG     +R++F +A+++AP +IF DEID+V  +RG   G    
Sbjct: 215 KVPFFTISGSDFVEMFVGVGASRVRDMFDQAKKSAPCIIFIDEIDAVGRQRGAGLGGGHD 274

Query: 625 VTEKVVNQLLTELDGLEEPKDVVIIAATNRPDILDQALLRPGRLDRIVLVPIPNETARLE 684
             E+ +NQ+L E+DG E  + +++IAATNRPD+LD ALLRPGR DR V+V +P+   R +
Sbjct: 275 EREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDAALLRPGRFDRQVVVGLPDVRGREQ 334

Query: 685 IFKVHTKGMPIGKDVNLEKLAKETKGYTGADIEAVCREAAMIALREN 731
           I KVH + +P+ +DV    +A+ T G++GAD+  +  EAA+ A R N
Sbjct: 335 ILKVHMRKVPLAEDVKASVIARGTPGFSGADLANLVNEAALFAARGN 381



 Score =  181 bits (458), Expect = 1e-49
 Identities = 90/199 (45%), Positives = 132/199 (66%), Gaps = 4/199 (2%)

Query: 175 TYEDIGGLKEEVKKIREMVELPMRYPELFDKLGIEPPKGVLLAGPPGTGKTLLAKAVANE 234
           T+ D+ G  E  ++++EMV+  +R P  F KLG   P GVL+ GPPGTGKTLLAKA+A E
Sbjct: 155 TFADVAGCDEAKEEVKEMVDY-LRDPTKFQKLGGRIPTGVLMVGPPGTGKTLLAKAIAGE 213

Query: 235 AGANFYTINGPEIMSKYVGETEENLRKIFEEAEENSPSIIFIDEIDAVAPKRDEASG--- 291
           A   F+TI+G + +  +VG     +R +F++A++++P IIFIDEIDAV  +R    G   
Sbjct: 214 AKVPFFTISGSDFVEMFVGVGASRVRDMFDQAKKSAPCIIFIDEIDAVGRQRGAGLGGGH 273

Query: 292 EVERRMVAQLLTLMDGLESRGQLVILAATNRPDSIDMALRRPGRLDREITIGIPDRHGRN 351
           +   + + Q+L  MDG E    ++++AATNRPD +D AL RPGR DR++ +G+PD  GR 
Sbjct: 274 DEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDAALLRPGRFDRQVVVGLPDVRGRE 333

Query: 352 EILQIHTRNMPLQPDYEKS 370
           +IL++H R +PL  D + S
Sbjct: 334 QILKVHMRKVPLAEDVKAS 352