Pairwise Alignments

Query, 788 a.a., CDC48 family AAA ATPase from Methanococcus maripaludis S2

Subject, 640 a.a., Peptidase M41, FtsH (NCBI) from Rhodospirillum rubrum S1H

 Score =  206 bits (524), Expect = 3e-57
 Identities = 113/285 (39%), Positives = 170/285 (59%), Gaps = 20/285 (7%)

Query: 504 IKWSDVGGLEDIKQDLKEAVEWPIKNKEMFERMGIRPPKGVLLFGPPGTGKTLLAKAVAN 563
           + + DV G+++ KQ+L+E VE+ +++ + F+R+G + PKGVLL GPPGTGKTLLA+A+A 
Sbjct: 152 VTFDDVAGIDEAKQELEEVVEF-LRDPQKFQRLGGKIPKGVLLVGPPGTGKTLLARAIAG 210

Query: 564 ESEANFISVKGPEIFSKWVGESEKAIREIFRKARQAAPTVIFFDEIDSVAPKRGMDFGSS 623
           E+   F ++ G +    +VG     +R++F + ++ AP +IF DEID+V   RG   G  
Sbjct: 211 EANVPFFTISGSDFVEMFVGVGASRVRDMFEQGKKNAPCLIFIDEIDAVGRHRGAGLGGG 270

Query: 624 G-VTEKVVNQLLTELDGLEEPKDVVIIAATNRPDILDQALLRPGRLDRIVLVPIPNETAR 682
               E+ +NQLL E+DG E  + V++IAATNRPD+LD ALLRPGR DR V V  P+   R
Sbjct: 271 NDEREQTLNQLLVEMDGFEANEGVILIAATNRPDVLDPALLRPGRFDRQVTVSNPDIMGR 330

Query: 683 LEIFKVHTKGMPIGKDVNLEKLAKETKGYTGADIEAVCREAAMIALRENINSEHVESRHF 742
            +I KVH +  P+G DV+ + +A+ T G++GAD+  +  EAA++A R+            
Sbjct: 331 EKILKVHMRKTPLGPDVDAKVIARGTPGFSGADLSNLVNEAALLAARKG----------- 379

Query: 743 DGAFKRIAPSVKDDDMDEYKDLAKEYGQNAGVSEIEKGPENTGYH 787
               KR+   V   + +E KD      +   +   E   E T YH
Sbjct: 380 ----KRV---VTMAEFEEAKDKVLMGAERRSMVMTEDEKEKTAYH 417



 Score =  191 bits (485), Expect = 1e-52
 Identities = 113/295 (38%), Positives = 172/295 (58%), Gaps = 20/295 (6%)

Query: 165 ELKETKVPNVTYEDIGGLKEEVKKIREMVELPMRYPELFDKLGIEPPKGVLLAGPPGTGK 224
           +L   K   VT++D+ G+ E  +++ E+VE  +R P+ F +LG + PKGVLL GPPGTGK
Sbjct: 143 KLLTEKTGRVTFDDVAGIDEAKQELEEVVEF-LRDPQKFQRLGGKIPKGVLLVGPPGTGK 201

Query: 225 TLLAKAVANEAGANFYTINGPEIMSKYVGETEENLRKIFEEAEENSPSIIFIDEIDAVAP 284
           TLLA+A+A EA   F+TI+G + +  +VG     +R +FE+ ++N+P +IFIDEIDAV  
Sbjct: 202 TLLARAIAGEANVPFFTISGSDFVEMFVGVGASRVRDMFEQGKKNAPCLIFIDEIDAVGR 261

Query: 285 KRDEASG---EVERRMVAQLLTLMDGLESRGQLVILAATNRPDSIDMALRRPGRLDREIT 341
            R    G   +   + + QLL  MDG E+   ++++AATNRPD +D AL RPGR DR++T
Sbjct: 262 HRGAGLGGGNDEREQTLNQLLVEMDGFEANEGVILIAATNRPDVLDPALLRPGRFDRQVT 321

Query: 342 IGIPDRHGRNEILQIHTRNMPLQPDYEKSDVI--------SILNELVGEYDRSKIESLVK 393
           +  PD  GR +IL++H R  PL PD +   +         + L+ LV E          +
Sbjct: 322 VSNPDIMGREKILKVHMRKTPLGPDVDAKVIARGTPGFSGADLSNLVNEAALLAARKGKR 381

Query: 394 LVEKASSEEEIEKILKDGEVEDKVKVKLNQLMVKELADKT-HGFAGADLAALSKE 447
           +V  A  EE  +K+L   E       + + +M ++  +KT +  AG  L A+ +E
Sbjct: 382 VVTMAEFEEAKDKVLMGAE-------RRSMVMTEDEKEKTAYHEAGHALIAIHQE 429