Pairwise Alignments

Query, 788 a.a., CDC48 family AAA ATPase from Methanococcus maripaludis S2

Subject, 652 a.a., AAA family ATPase from Rhodopseudomonas palustris CGA009

 Score =  442 bits (1136), Expect = e-128
 Identities = 252/618 (40%), Positives = 358/618 (57%), Gaps = 66/618 (10%)

Query: 120 VDKGSKVVIGVLGTAFPFIVTGTTPKGPVKINEYTQIELKTEPVTELKETKVPNVTYEDI 179
           V +G +V IG  G    ++V    P G   I+  T++ +    + +   +      Y+D+
Sbjct: 62  VARGDRVEIGSKGQRRCYMVVDVIPDGSGVIDRATEVTIDHRAMADATTSP-----YDDV 116

Query: 180 GGLKEEVKKIREMVELPMRYPELFDKLGIEPPKGVLLAGPPGTGKTLLAKAVANEAGANF 239
           GGL  EV  +REMVELP+R+P +F +LGIE PKGVLL GPPG GKTL+A+ VA EAG  F
Sbjct: 117 GGLAREVALVREMVELPLRFPHVFARLGIEAPKGVLLYGPPGCGKTLIARTVAREAGVYF 176

Query: 240 YTINGPEIMSKYVGETEENLRKIFEEAEENSPSIIFIDEIDAVAPKRDEASGEVERRMVA 299
             +NGPEI+ K+ GE+EE LR+IF +A++   +IIF DEIDA+AP R+   G+VE+R+VA
Sbjct: 177 LHVNGPEIIQKHYGESEEMLRRIFADAQKQPAAIIFFDEIDAIAPNRETVLGDVEKRVVA 236

Query: 300 QLLTLMDGLESRGQLVILAATNRPDSIDMALRRPGRLDREITIGIPDRHGRNEILQIHTR 359
           QLL LMDGL +                                       R  I+ I   
Sbjct: 237 QLLALMDGLTA---------------------------------------RGNIVVIAAT 257

Query: 360 NMP--LQPDYEKSDVISILNELVGEYDRSKIESLVKLVEKASSEEEIEKILKDGEVEDKV 417
           N+P  L P   +           G +DR   E  +   ++A   E +    +   + D V
Sbjct: 258 NLPNSLDPALRRP----------GRFDR---EIGIAPPDRAGRLEILRIHTRRMPLADDV 304

Query: 418 KVKLNQLMVKELADKTHGFAGADLAALSKEAAMKTLRRFLPDIDLEKEEIPREVLDKIKV 477
            +        ++A   HG+ GADLAAL +EAAM   R   P +          +   ++V
Sbjct: 305 DLA-------QIAAAAHGYLGADLAALCREAAMGCTRDLGPRLVAGDPGAAAALDGDLQV 357

Query: 478 TKEDFVGGLKEVEPSALREVLVEVPNIKWSDVGGLEDIKQDLKEAVEWPIKNKEMFERMG 537
             + F   L+EV  ++ R +  EV    W +VGGL+DIK  L+E VEWP+K  +      
Sbjct: 358 RMDHFRRALREVPLASTRSLTTEVAASHWDEVGGLDDIKALLRETVEWPLKYPQRLAFAK 417

Query: 538 IRPPKGVLLFGPPGTGKTLLAKAVANESEANFISVKGPEIFSKWVGESEKAIREIFRKAR 597
              P+G+LL GP GTGKTL+ +A+A +S+ NFI+V GPE+ SKWVGE+E+AIR++FRKAR
Sbjct: 418 TTAPRGILLTGPTGTGKTLIVRALATQSDVNFIAVNGPELLSKWVGETERAIRDVFRKAR 477

Query: 598 QAAPTVIFFDEIDSVAPKRGMDFGSSGVTEKVVNQLLTELDGLEEPKDVVIIAATNRPDI 657
           Q+AP++IFFDE+D++   RG D G + + +++V Q L E+DGL     VV+IAATNRPD+
Sbjct: 478 QSAPSIIFFDEVDAIVASRGGDDGGARIGDRMVGQFLLEMDGLAGLDGVVVIAATNRPDL 537

Query: 658 LDQALLRPGRLDRIVLVPIPNETARLEIFKVHTKGMPIGKDVNLEKLAKETKGYTGADIE 717
           +D+ALLRPGR D I  + +P+  AR  I  +H +G  +G DV+L  LAK   G +GAD+E
Sbjct: 538 IDRALLRPGRFDHIATLALPDRAARAAILAIHCRGRALGSDVDLAALAKACAGMSGADLE 597

Query: 718 AVCREAAMIALRENINSE 735
           A+CR AAM A+R +I +E
Sbjct: 598 ALCRRAAMAAIRASIIAE 615