Pairwise Alignments

Query, 788 a.a., CDC48 family AAA ATPase from Methanococcus maripaludis S2

Subject, 637 a.a., ATP-dependent zinc metalloprotease FtsH from Phaeobacter inhibens DSM 17395

 Score =  200 bits (509), Expect = 2e-55
 Identities = 103/247 (41%), Positives = 158/247 (63%), Gaps = 4/247 (1%)

Query: 504 IKWSDVGGLEDIKQDLKEAVEWPIKNKEMFERMGIRPPKGVLLFGPPGTGKTLLAKAVAN 563
           + + DV G+++ K++L+E VE+ ++N + F R+G + PKG LL GPPGTGKTLLA+A+A 
Sbjct: 151 VTFDDVAGIDEAKEELEEIVEF-LRNPQKFSRLGGKIPKGALLVGPPGTGKTLLARAIAG 209

Query: 564 ESEANFISVKGPEIFSKWVGESEKAIREIFRKARQAAPTVIFFDEIDSVAPKRGMDFGSS 623
           E+   F ++ G +    +VG     +R++F +A++ AP ++F DEID+V   RG  +G  
Sbjct: 210 EAGVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKNAPCIVFIDEIDAVGRHRGAGYGGG 269

Query: 624 G-VTEKVVNQLLTELDGLEEPKDVVIIAATNRPDILDQALLRPGRLDRIVLVPIPNETAR 682
               E+ +NQLL E+DG E  + V+I+AATNR D+LD ALLRPGR DR V V  P+   R
Sbjct: 270 NDEREQTLNQLLVEMDGFEANEGVIILAATNRKDVLDPALLRPGRFDRNVTVGNPDIKGR 329

Query: 683 LEIFKVHTKGMPIGKDVNLEKLAKETKGYTGADIEAVCREAAMIALRENINSEHVESRHF 742
            +I  VH +  P+G DV+L  +A+ T G++GAD+  +  EAA++A R  +    V    F
Sbjct: 330 EKILGVHARKTPLGPDVDLRIIARGTPGFSGADLANLVNEAALMAAR--VGRRFVTMEDF 387

Query: 743 DGAFKRI 749
           + A  ++
Sbjct: 388 ESAKDKV 394



 Score =  187 bits (474), Expect = 2e-51
 Identities = 95/198 (47%), Positives = 133/198 (67%), Gaps = 4/198 (2%)

Query: 174 VTYEDIGGLKEEVKKIREMVELPMRYPELFDKLGIEPPKGVLLAGPPGTGKTLLAKAVAN 233
           VT++D+ G+ E  +++ E+VE  +R P+ F +LG + PKG LL GPPGTGKTLLA+A+A 
Sbjct: 151 VTFDDVAGIDEAKEELEEIVEF-LRNPQKFSRLGGKIPKGALLVGPPGTGKTLLARAIAG 209

Query: 234 EAGANFYTINGPEIMSKYVGETEENLRKIFEEAEENSPSIIFIDEIDAVAPKRDEASG-- 291
           EAG  F+TI+G + +  +VG     +R +FE+A++N+P I+FIDEIDAV   R    G  
Sbjct: 210 EAGVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKNAPCIVFIDEIDAVGRHRGAGYGGG 269

Query: 292 -EVERRMVAQLLTLMDGLESRGQLVILAATNRPDSIDMALRRPGRLDREITIGIPDRHGR 350
            +   + + QLL  MDG E+   ++ILAATNR D +D AL RPGR DR +T+G PD  GR
Sbjct: 270 NDEREQTLNQLLVEMDGFEANEGVIILAATNRKDVLDPALLRPGRFDRNVTVGNPDIKGR 329

Query: 351 NEILQIHTRNMPLQPDYE 368
            +IL +H R  PL PD +
Sbjct: 330 EKILGVHARKTPLGPDVD 347



 Score = 28.5 bits (62), Expect = 0.001
 Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 3/38 (7%)

Query: 429 LADKTHGFAGADLAALSKEAAM---KTLRRFLPDIDLE 463
           +A  T GF+GADLA L  EAA+   +  RRF+   D E
Sbjct: 351 IARGTPGFSGADLANLVNEAALMAARVGRRFVTMEDFE 388