Pairwise Alignments

Query, 788 a.a., CDC48 family AAA ATPase from Methanococcus maripaludis S2

Subject, 655 a.a., ATP-dependent metalloprotease FtsH (RefSeq) from Shewanella loihica PV-4

 Score =  205 bits (521), Expect = 7e-57
 Identities = 104/238 (43%), Positives = 156/238 (65%), Gaps = 5/238 (2%)

Query: 506 WSDVGGLEDIKQDLKEAVEWPIKNKEMFERMGIRPPKGVLLFGPPGTGKTLLAKAVANES 565
           + DV G ++ K+D+KE V++ +K    F+++G R P GVLL GPPGTGKTLLAKA+A E+
Sbjct: 156 FGDVAGCDEAKEDVKELVDY-LKEPTKFQKLGGRIPTGVLLVGPPGTGKTLLAKAIAGEA 214

Query: 566 EANFISVKGPEIFSKWVGESEKAIREIFRKARQAAPTVIFFDEIDSVAPKRGMDFGSS-G 624
           +  F ++ G +    +VG     +R++F +A+++AP +IF DEID+V  +RG   G    
Sbjct: 215 KVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKSAPCIIFIDEIDAVGRQRGAGVGGGHD 274

Query: 625 VTEKVVNQLLTELDGLEEPKDVVIIAATNRPDILDQALLRPGRLDRIVLVPIPNETARLE 684
             E+ +NQ+L E+DG E  + +++IAATNRPD+LD ALLRPGR DR V+V +P+   R +
Sbjct: 275 EREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDAALLRPGRFDRQVVVGLPDVRGREQ 334

Query: 685 IFKVHTKGMPIGKDVNLEKLAKETKGYTGADIEAVCREAAMIALREN---INSEHVES 739
           I KVH + +P+  DV    +A+ T G++GAD+  +  EAA+ A R N   +  E  ES
Sbjct: 335 ILKVHMRKVPLADDVKASVIARGTPGFSGADLANLVNEAALFAARGNRRVVGMEEFES 392



 Score =  179 bits (455), Expect = 3e-49
 Identities = 90/199 (45%), Positives = 131/199 (65%), Gaps = 4/199 (2%)

Query: 175 TYEDIGGLKEEVKKIREMVELPMRYPELFDKLGIEPPKGVLLAGPPGTGKTLLAKAVANE 234
           T+ D+ G  E  + ++E+V+  ++ P  F KLG   P GVLL GPPGTGKTLLAKA+A E
Sbjct: 155 TFGDVAGCDEAKEDVKELVDY-LKEPTKFQKLGGRIPTGVLLVGPPGTGKTLLAKAIAGE 213

Query: 235 AGANFYTINGPEIMSKYVGETEENLRKIFEEAEENSPSIIFIDEIDAVAPKRDEASG--- 291
           A   F+TI+G + +  +VG     +R +FE+A++++P IIFIDEIDAV  +R    G   
Sbjct: 214 AKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKSAPCIIFIDEIDAVGRQRGAGVGGGH 273

Query: 292 EVERRMVAQLLTLMDGLESRGQLVILAATNRPDSIDMALRRPGRLDREITIGIPDRHGRN 351
           +   + + Q+L  MDG E    ++++AATNRPD +D AL RPGR DR++ +G+PD  GR 
Sbjct: 274 DEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDAALLRPGRFDRQVVVGLPDVRGRE 333

Query: 352 EILQIHTRNMPLQPDYEKS 370
           +IL++H R +PL  D + S
Sbjct: 334 QILKVHMRKVPLADDVKAS 352