Pairwise Alignments

Query, 788 a.a., CDC48 family AAA ATPase from Methanococcus maripaludis S2

Subject, 609 a.a., ATP-dependent metalloprotease FtsH from Dechlorosoma suillum PS

 Score =  216 bits (549), Expect = 4e-60
 Identities = 116/274 (42%), Positives = 173/274 (63%), Gaps = 5/274 (1%)

Query: 483 VGGLKEVEPSALREVLVEVPNIKWSDVGGLEDIKQDLKEAVEWPIKNKEMFERMGIRPPK 542
           +GG   +  S  +  + +   + ++DV G+++ K +L E V++ +KN + + R+G R PK
Sbjct: 133 MGGFLSIGKSRAKVFMEKNTGVTFADVAGVDEAKAELVEIVDF-LKNPQEYGRLGARIPK 191

Query: 543 GVLLFGPPGTGKTLLAKAVANESEANFISVKGPEIFSKWVGESEKAIREIFRKARQAAPT 602
           GVLL GPPGTGKTLLAKAVA E+   F S+ G E    +VG     +R++F +AR  AP 
Sbjct: 192 GVLLVGPPGTGKTLLAKAVAGEAAVPFFSISGSEFVEMFVGVGAARVRDLFEQARGQAPA 251

Query: 603 VIFFDEIDSVAPKRGMD--FGSSGVTEKVVNQLLTELDGLEEPKDVVIIAATNRPDILDQ 660
           +IF DE+D++   RG+    G     E+ +NQLLTE+DG +    ++I+AATNRP+ILDQ
Sbjct: 252 IIFIDELDALGRARGVGGPIGGHDEREQTLNQLLTEMDGFDSSVGLIILAATNRPEILDQ 311

Query: 661 ALLRPGRLDRIVLVPIPNETARLEIFKVHTKGMPIGKDVNLEKLAKETKGYTGADIEAVC 720
           ALLR GR DR VLV  P++  RL+I KVH K + +  DV+LE++A  T G++GAD+  + 
Sbjct: 312 ALLRAGRFDRQVLVDRPDKKGRLDILKVHVKKVTLASDVDLEQVAALTTGFSGADLANLV 371

Query: 721 REAAMIALRENINSEHVESRHFDGAFKRIAPSVK 754
            EAA+ A R    +  V+ + F  A +RI   ++
Sbjct: 372 NEAALAATRRKARA--VKLQDFTAAIERIVAGLE 403



 Score =  171 bits (433), Expect = 1e-46
 Identities = 102/260 (39%), Positives = 151/260 (58%), Gaps = 13/260 (5%)

Query: 170 KVPNVTYEDIGGLKEEVKKIREMVELPMRYPELFDKLGIEPPKGVLLAGPPGTGKTLLAK 229
           K   VT+ D+ G+ E   ++ E+V+  ++ P+ + +LG   PKGVLL GPPGTGKTLLAK
Sbjct: 150 KNTGVTFADVAGVDEAKAELVEIVDF-LKNPQEYGRLGARIPKGVLLVGPPGTGKTLLAK 208

Query: 230 AVANEAGANFYTINGPEIMSKYVGETEENLRKIFEEAEENSPSIIFIDEIDAVAPKR--- 286
           AVA EA   F++I+G E +  +VG     +R +FE+A   +P+IIFIDE+DA+   R   
Sbjct: 209 AVAGEAAVPFFSISGSEFVEMFVGVGAARVRDLFEQARGQAPAIIFIDELDALGRARGVG 268

Query: 287 DEASGEVER-RMVAQLLTLMDGLESRGQLVILAATNRPDSIDMALRRPGRLDREITIGIP 345
               G  ER + + QLLT MDG +S   L+ILAATNRP+ +D AL R GR DR++ +  P
Sbjct: 269 GPIGGHDEREQTLNQLLTEMDGFDSSVGLIILAATNRPEILDQALLRAGRFDRQVLVDRP 328

Query: 346 DRHGRNEILQIHTRNMPLQPDYEKSDVISI--------LNELVGEYDRSKIESLVKLVEK 397
           D+ GR +IL++H + + L  D +   V ++        L  LV E   +      + V+ 
Sbjct: 329 DKKGRLDILKVHVKKVTLASDVDLEQVAALTTGFSGADLANLVNEAALAATRRKARAVKL 388

Query: 398 ASSEEEIEKILKDGEVEDKV 417
                 IE+I+   E  ++V
Sbjct: 389 QDFTAAIERIVAGLEKRNRV 408