Pairwise Alignments

Query, 788 a.a., CDC48 family AAA ATPase from Methanococcus maripaludis S2

Subject, 609 a.a., Mycobacterial proteasome ATPase Mpa from Mycobacterium tuberculosis H37Rv

 Score =  182 bits (463), Expect = 4e-50
 Identities = 98/222 (44%), Positives = 150/222 (67%), Gaps = 21/222 (9%)

Query: 497 VLVEVPNIKWSDVGGLEDIKQDLKEAVEWPIKNKEMFERMGIRPPKGVLLFGPPGTGKTL 556
           VL EVP++ ++D+GGL    + +++AVE P  +KE++    +RPPKGVLL+GPPG GKTL
Sbjct: 242 VLEEVPDVSYADIGGLSRQIEQIRDAVELPFLHKELYREYSLRPPKGVLLYGPPGCGKTL 301

Query: 557 LAKAVAN---------------ESEANFISVKGPEIFSKWVGESEKAIREIFRKARQAA- 600
           +AKAVAN               E+++ F+++KGPE+ +K+VGE+E+ IR IF++AR+ A 
Sbjct: 302 IAKAVANSLAKKMAEVRGDDAHEAKSYFLNIKGPELLNKFVGETERHIRLIFQRAREKAS 361

Query: 601 ---PTVIFFDEIDSVAPKRGMDFGSSGVTEKVVNQLLTELDGLEEPKDVVIIAATNRPDI 657
              P ++FFDE+DS+   RG    SS V   VV QLL+E+DG+E  ++V++I A+NR D+
Sbjct: 362 EGTPVIVFFDEMDSIFRTRGTGV-SSDVETTVVPQLLSEIDGVEGLENVIVIGASNREDM 420

Query: 658 LDQALLRPGRLDRIVLVPIPNETARLEIF-KVHTKGMPIGKD 698
           +D A+LRPGRLD  + +  P+  A  +I+ K  T+ +P+  D
Sbjct: 421 IDPAILRPGRLDVKIKIERPDAEAAQDIYSKYLTEFLPVHAD 462



 Score =  172 bits (435), Expect = 6e-47
 Identities = 97/225 (43%), Positives = 140/225 (62%), Gaps = 21/225 (9%)

Query: 163 VTELKETKVPNVTYEDIGGLKEEVKKIREMVELPMRYPELFDKLGIEPPKGVLLAGPPGT 222
           V +L   +VP+V+Y DIGGL  ++++IR+ VELP  + EL+ +  + PPKGVLL GPPG 
Sbjct: 238 VEDLVLEEVPDVSYADIGGLSRQIEQIRDAVELPFLHKELYREYSLRPPKGVLLYGPPGC 297

Query: 223 GKTLLAKAVAN---------------EAGANFYTINGPEIMSKYVGETEENLRKIF---- 263
           GKTL+AKAVAN               EA + F  I GPE+++K+VGETE ++R IF    
Sbjct: 298 GKTLIAKAVANSLAKKMAEVRGDDAHEAKSYFLNIKGPELLNKFVGETERHIRLIFQRAR 357

Query: 264 EEAEENSPSIIFIDEIDAVAPKRDE-ASGEVERRMVAQLLTLMDGLESRGQLVILAATNR 322
           E+A E +P I+F DE+D++   R    S +VE  +V QLL+ +DG+E    ++++ A+NR
Sbjct: 358 EKASEGTPVIVFFDEMDSIFRTRGTGVSSDVETTVVPQLLSEIDGVEGLENVIVIGASNR 417

Query: 323 PDSIDMALRRPGRLDREITIGIPDRHGRNEILQIH-TRNMPLQPD 366
            D ID A+ RPGRLD +I I  PD     +I   + T  +P+  D
Sbjct: 418 EDMIDPAILRPGRLDVKIKIERPDAEAAQDIYSKYLTEFLPVHAD 462