Pairwise Alignments

Query, 788 a.a., CDC48 family AAA ATPase from Methanococcus maripaludis S2

Subject, 671 a.a., ATP-dependent metalloprotease FtsH (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  210 bits (535), Expect = 2e-58
 Identities = 112/259 (43%), Positives = 164/259 (63%), Gaps = 4/259 (1%)

Query: 492 SALREVLVEVPNIKWSDVGGLEDIKQDLKEAVEWPIKNKEMFERMGIRPPKGVLLFGPPG 551
           S  R +  E   + + DV G+++ K++L E VE+ + N   F R+G R PKGVLL GPPG
Sbjct: 138 SRARMITPESARVTFEDVAGVDEAKEELSEVVEF-LSNPRKFTRLGGRIPKGVLLVGPPG 196

Query: 552 TGKTLLAKAVANESEANFISVKGPEIFSKWVGESEKAIREIFRKARQAAPTVIFFDEIDS 611
           TGKTLLA+AVA E+   F S+ G +    +VG     +R++F + +++AP +IF DEID+
Sbjct: 197 TGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFMQGKKSAPCLIFIDEIDA 256

Query: 612 VAPKRGMDFGSS-GVTEKVVNQLLTELDGLEEPKDVVIIAATNRPDILDQALLRPGRLDR 670
           V  +RG   G      E+ +NQLL E+DG E  + V++IAATNRPD+LD ALLRPGR DR
Sbjct: 257 VGRQRGAGLGGGHDEREQTLNQLLVEMDGFESNEGVILIAATNRPDVLDPALLRPGRFDR 316

Query: 671 IVLVPIPNETARLEIFKVHTKGMPIGKDVNLEKLAKETKGYTGADIEAVCREAAMIALRE 730
            V+VP P+   R  I +VHT+  P+   V L+ +AK T G++GAD+E +  EAA+ A + 
Sbjct: 317 QVVVPTPDVRGRKRILEVHTRRTPLATGVVLDIIAKGTPGFSGADLENLVNEAALQAAK- 375

Query: 731 NINSEHVESRHFDGAFKRI 749
            +  + V+   F+ A  ++
Sbjct: 376 -VGKDTVDMGDFEYAKDKV 393



 Score =  177 bits (450), Expect = 1e-48
 Identities = 94/220 (42%), Positives = 138/220 (62%), Gaps = 16/220 (7%)

Query: 174 VTYEDIGGLKEEVKKIREMVELPMRYPELFDKLGIEPPKGVLLAGPPGTGKTLLAKAVAN 233
           VT+ED+ G+ E  +++ E+VE  +  P  F +LG   PKGVLL GPPGTGKTLLA+AVA 
Sbjct: 150 VTFEDVAGVDEAKEELSEVVEF-LSNPRKFTRLGGRIPKGVLLVGPPGTGKTLLARAVAG 208

Query: 234 EAGANFYTINGPEIMSKYVGETEENLRKIFEEAEENSPSIIFIDEIDAVAPKRDEASG-- 291
           EAG  F++I+G + +  +VG     +R +F + ++++P +IFIDEIDAV  +R    G  
Sbjct: 209 EAGVPFFSISGSDFVEMFVGVGASRVRDLFMQGKKSAPCLIFIDEIDAVGRQRGAGLGGG 268

Query: 292 -EVERRMVAQLLTLMDGLESRGQLVILAATNRPDSIDMALRRPGRLDREITIGIPDRHGR 350
            +   + + QLL  MDG ES   ++++AATNRPD +D AL RPGR DR++ +  PD  GR
Sbjct: 269 HDEREQTLNQLLVEMDGFESNEGVILIAATNRPDVLDPALLRPGRFDRQVVVPTPDVRGR 328

Query: 351 NEILQIHTRNMPL------------QPDYEKSDVISILNE 378
             IL++HTR  PL             P +  +D+ +++NE
Sbjct: 329 KRILEVHTRRTPLATGVVLDIIAKGTPGFSGADLENLVNE 368