Pairwise Alignments

Query, 788 a.a., CDC48 family AAA ATPase from Methanococcus maripaludis S2

Subject, 649 a.a., cell division protein FtsH (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  204 bits (520), Expect = 9e-57
 Identities = 99/227 (43%), Positives = 155/227 (68%), Gaps = 2/227 (0%)

Query: 506 WSDVGGLEDIKQDLKEAVEWPIKNKEMFERMGIRPPKGVLLFGPPGTGKTLLAKAVANES 565
           ++DV G ++ K+++KE V++ +++   F+++G R P GVL+ GPPGTGKTLLAKA+A ES
Sbjct: 153 FADVAGCDEAKEEVKELVDY-LRDPTKFQKLGGRIPTGVLMVGPPGTGKTLLAKAIAGES 211

Query: 566 EANFISVKGPEIFSKWVGESEKAIREIFRKARQAAPTVIFFDEIDSVAPKRGMDFGSS-G 624
           +  F ++ G +    +VG     +R++F +A+++AP +IF DEID+V  +RG   G    
Sbjct: 212 KVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKSAPCIIFIDEIDAVGRQRGAGLGGGHD 271

Query: 625 VTEKVVNQLLTELDGLEEPKDVVIIAATNRPDILDQALLRPGRLDRIVLVPIPNETARLE 684
             E+ +NQ+L E+DG E  + +++IAATNRPD+LD ALLRPGR DR V+V +P+   R +
Sbjct: 272 EREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDSALLRPGRFDRQVVVGLPDVRGREQ 331

Query: 685 IFKVHTKGMPIGKDVNLEKLAKETKGYTGADIEAVCREAAMIALREN 731
           I KVH + +P+ +DV    +A+ T G++GAD+  +  EAA+ A R N
Sbjct: 332 ILKVHMRKVPLSEDVKASVIARGTPGFSGADLANLVNEAALFAARGN 378



 Score =  180 bits (457), Expect = 2e-49
 Identities = 99/260 (38%), Positives = 156/260 (60%), Gaps = 29/260 (11%)

Query: 175 TYEDIGGLKEEVKKIREMVELPMRYPELFDKLGIEPPKGVLLAGPPGTGKTLLAKAVANE 234
           T+ D+ G  E  ++++E+V+  +R P  F KLG   P GVL+ GPPGTGKTLLAKA+A E
Sbjct: 152 TFADVAGCDEAKEEVKELVDY-LRDPTKFQKLGGRIPTGVLMVGPPGTGKTLLAKAIAGE 210

Query: 235 AGANFYTINGPEIMSKYVGETEENLRKIFEEAEENSPSIIFIDEIDAVAPKRDEASG--- 291
           +   F+TI+G + +  +VG     +R +FE+A++++P IIFIDEIDAV  +R    G   
Sbjct: 211 SKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKSAPCIIFIDEIDAVGRQRGAGLGGGH 270

Query: 292 EVERRMVAQLLTLMDGLESRGQLVILAATNRPDSIDMALRRPGRLDREITIGIPDRHGRN 351
           +   + + Q+L  MDG E    ++++AATNRPD +D AL RPGR DR++ +G+PD  GR 
Sbjct: 271 DEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDSALLRPGRFDRQVVVGLPDVRGRE 330

Query: 352 EILQIHTRNMPLQ------------PDYEKSDVISILNE-----------LVG--EYDRS 386
           +IL++H R +PL             P +  +D+ +++NE           +VG  E++R+
Sbjct: 331 QILKVHMRKVPLSEDVKASVIARGTPGFSGADLANLVNEAALFAARGNRRVVGMEEFERA 390

Query: 387 KIESLVKLVEKASSEEEIEK 406
           K + ++    ++    E EK
Sbjct: 391 KDKIMMGAERRSMVMSEAEK 410