Pairwise Alignments

Query, 788 a.a., CDC48 family AAA ATPase from Methanococcus maripaludis S2

Subject, 696 a.a., AAA-metalloprotease FtsH, with ATPase domain (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  201 bits (511), Expect = 1e-55
 Identities = 109/248 (43%), Positives = 158/248 (63%), Gaps = 5/248 (2%)

Query: 504 IKWSDVGGLEDIKQDLKEAVEWPIKNKEMFERMGIRPPKGVLLFGPPGTGKTLLAKAVAN 563
           I + DV GL + KQ+++E VE+ +K  + +  +G + PKG LL GPPGTGKTLLAKAVA 
Sbjct: 174 ITFKDVAGLAEAKQEVEEIVEF-LKEPQKYTDLGGKIPKGALLVGPPGTGKTLLAKAVAG 232

Query: 564 ESEANFISVKGPEIFSKWVGESEKAIREIFRKARQAAPTVIFFDEIDSVAPKRGMD--FG 621
           E+   F S+ G +    +VG     +R++F++A++ AP ++F DEID+V   RG +   G
Sbjct: 233 EANVPFFSLAGSDFVEMFVGVGASRVRDLFKQAKEKAPCIVFIDEIDAVGRARGKNPAMG 292

Query: 622 SSGVTEKVVNQLLTELDGLEEPKDVVIIAATNRPDILDQALLRPGRLDRIVLVPIPNETA 681
            +   E  +NQLLTE+DG      V+I+AATNR D+LD+ALLR GR DR + V +P+   
Sbjct: 293 GNDERENTLNQLLTEMDGFGSNSGVIILAATNRVDVLDKALLRAGRFDRQIHVDLPDLNE 352

Query: 682 RLEIFKVHTKGMPIGKDVNLEKLAKETKGYTGADIEAVCREAAMIALRENINSEHVESRH 741
           R E+F VH + + I   V+++ LA++T G++GADI  VC EAA+IA R     + V  + 
Sbjct: 353 RKEVFGVHLRPIKIDDTVDVDLLARQTPGFSGADIANVCNEAALIAARH--GKKFVGKQD 410

Query: 742 FDGAFKRI 749
           F  A  RI
Sbjct: 411 FLDAVDRI 418



 Score =  164 bits (415), Expect = 2e-44
 Identities = 99/262 (37%), Positives = 150/262 (57%), Gaps = 23/262 (8%)

Query: 174 VTYEDIGGLKEEVKKIREMVELPMRYPELFDKLGIEPPKGVLLAGPPGTGKTLLAKAVAN 233
           +T++D+ GL E  +++ E+VE  ++ P+ +  LG + PKG LL GPPGTGKTLLAKAVA 
Sbjct: 174 ITFKDVAGLAEAKQEVEEIVEF-LKEPQKYTDLGGKIPKGALLVGPPGTGKTLLAKAVAG 232

Query: 234 EAGANFYTINGPEIMSKYVGETEENLRKIFEEAEENSPSIIFIDEIDAVAPKRDE---AS 290
           EA   F+++ G + +  +VG     +R +F++A+E +P I+FIDEIDAV   R +     
Sbjct: 233 EANVPFFSLAGSDFVEMFVGVGASRVRDLFKQAKEKAPCIVFIDEIDAVGRARGKNPAMG 292

Query: 291 GEVER-RMVAQLLTLMDGLESRGQLVILAATNRPDSIDMALRRPGRLDREITIGIPDRHG 349
           G  ER   + QLLT MDG  S   ++ILAATNR D +D AL R GR DR+I + +PD + 
Sbjct: 293 GNDERENTLNQLLTEMDGFGSNSGVIILAATNRVDVLDKALLRAGRFDRQIHVDLPDLNE 352

Query: 350 RNEILQIHTRNMPLQ------------PDYEKSDVISILNELVGEYDRSKIESLVKLVEK 397
           R E+  +H R + +             P +  +D+ ++ NE      R       K V K
Sbjct: 353 RKEVFGVHLRPIKIDDTVDVDLLARQTPGFSGADIANVCNEAALIAARHG----KKFVGK 408

Query: 398 ASSEEEIEKILKDGEVEDKVKV 419
               + +++I+  G +E K K+
Sbjct: 409 QDFLDAVDRII--GGLEKKTKI 428