Pairwise Alignments

Query, 460 a.a., MATE family efflux transporter from Methanococcus maripaludis S2

Subject, 432 a.a., Na+ driven multidrug efflux pump from Pseudomonas fluorescens FW300-N2E2

 Score =  110 bits (274), Expect = 1e-28
 Identities = 100/432 (23%), Positives = 194/432 (44%), Gaps = 40/432 (9%)

Query: 25  MVIAMSFQSLYNVIDAIWVAG-LGSDALAAIGLFFPFMFAIMAISNGVGIGGSSAISRRI 83
           MV++   QS+    ++I++   LG+ ALAA+   FP +F  +A+  G+G G    I +  
Sbjct: 1   MVLSNFLQSMSGTFNSIYIGQMLGTQALAAVSGMFPIVFFFIALVIGLGAGAGVLIGQAY 60

Query: 84  GQNNKDAADNIAVHSIVLGIIIGILLIGVIPFLGAIFSL-----IGASGITVTMAVEYST 138
           G         IA  +++LG IIG+        LG++F+      +G     +  AV Y+ 
Sbjct: 61  GAGETGTVKAIAGSTLLLGAIIGL----AAAVLGSVFARQALQGLGTPADVLEDAVSYAR 116

Query: 139 ILFGGAVVLLFTNIANAILRGEGDTKRAMYAIILGSVLNIVLDPIFIY----VLNMGVAG 194
           ++     +LL   +   +LRG  DT   M A++  + + ++L P  I     +  MG+  
Sbjct: 117 VMLWILPMLLIFVLFTQLLRGVSDTVSPMLALLTSTSVGLLLTPALIRGWLGLPQMGIQS 176

Query: 195 AAWATLLSLVITGILFVYWLFIKKDTFL---KISFEKFKLDINIIKEIFSIGLPASISHL 251
           AA A L+    + +  + W   +++  L   +  F   +LD+ I+ ++  IGLP  +  +
Sbjct: 177 AALAGLVG-TASAMAMLAWRLNRREHALAPDRALFAAMRLDMEILGKVLRIGLPTGLQMV 235

Query: 252 TMAFSMFLLTAIVAKAGGNDGIAVFSTGWRIVSMGTIPLVGLATGVTVVTGAAYGSANPE 311
            ++ S  ++  +V  + G+   A +    +IV+    P + +A   +++   A G+   E
Sbjct: 236 VISLSELVILTLV-NSHGSQATAAYGAVTQIVNYVQFPALSIAITASILGAQAIGAGRLE 294

Query: 312 KLEISYKYALKMGILVETIIAALILIFENQITYLFTYSENSVHILEGLLVFLKYMFLFYP 371
           +L    +  L + + +   +  L  +  + +  LF     +    E LL  + +  L + 
Sbjct: 295 RLGPILRTGLLINLWLTGGLVVLGYLLSHWLLGLFITDPAARVQAEHLLHIMLWSLLVFG 354

Query: 372 TLPLGMLTAAMFQGVSKGNNSLF----ISLLRTIILQIPMAYTFGIIFNQGLTGVWFGMI 427
                    A+  G+ + + ++     IS+   +++Q+P AY     F  GL GVW    
Sbjct: 355 -------FQAIVGGIMRASGTVLVPVAISIFCIVVVQVPAAYLLDAHF--GLQGVW---- 401

Query: 428 LGHVIAVSIAYL 439
               +A  +AYL
Sbjct: 402 ----VAFPVAYL 409