Pairwise Alignments

Query, 460 a.a., MATE family efflux transporter from Methanococcus maripaludis S2

Subject, 444 a.a., Multi antimicrobial extrusion protein (Na(+)/drug antiporter), MATE family of MDR efflux pumps from Pseudomonas fluorescens FW300-N2E2

 Score = 92.4 bits (228), Expect = 3e-23
 Identities = 85/425 (20%), Positives = 173/425 (40%), Gaps = 21/425 (4%)

Query: 18  IVKISLPMVIAMSFQSLYNVIDAIWVAGLGSDALAAIGLFFPFMFAIMAISNGVGIGGSS 77
           ++ ++LP+++A    +    +DA+    +G   LAA+ L       +  +  G  +  + 
Sbjct: 1   LLALALPIMVAQLATTAMGFVDAVMAGRVGPRDLAAVALGNSIWVPVFLLMTGTLLATTP 60

Query: 78  AISRRIGQNNKDAADNIAVHSIVLGIIIGILLIGVIPFLGAIFSLIGASGITVTMAVEYS 137
            +++R G         +   ++ L +++G++    +     I  ++      +   +EY 
Sbjct: 61  KVAQRFGAGTFAEIGPLVRQALWLALVVGLIASLALFSAEPILHIMNVDPELIGPCMEYL 120

Query: 138 TILFGGAVVLLFTNIANAILRGEGDTKRAMYAIILGSVLNIVLDPIFIY----VLNMGVA 193
             +  G   +   ++      G G T+ AM   + G  LNI L+ IFIY    V  MG  
Sbjct: 121 RGIGTGLPAVALYHVLRCFSDGLGRTRPAMVLGLCGLALNIPLNYIFIYGHLGVPAMGGV 180

Query: 194 GAAWATLLSLVITGILFVYW-----LFIKKDTFLKISFEKFKLDINIIKEIFSIGLPASI 248
           G  WAT + + +  +    W      +     F +  + ++     +IK +  IGLP  I
Sbjct: 181 GCGWATAIVMWVMALGMAGWARWAPAYQSSRLFSRFDWPQWA----VIKRLLGIGLPIGI 236

Query: 249 SHLTMAFSMFLLTAIVAKAGGNDGIAVFSTGWRIVSMGTIPLVGLATGVTVVTGAAYGSA 308
           +    + S+F + A++  + G   +A         S+  +    L   VTV  G A G A
Sbjct: 237 AVFAES-SIFAVIALLIGSLGATVVAGHQIALNFSSLVFMIPYSLGMAVTVRVGQALGRA 295

Query: 309 NPEKLEISYKYALKMGILVETIIAALILIFENQITYLFTYSENSVHILEGLLVFLKYMFL 368
            P +   +    +   +    + A+L+      I  ++T     + +   L+V   Y  L
Sbjct: 296 QPREARFAAGVGMGTALAYACLSASLMFALRGPIAAIYTADPVVIEVASMLIV---YAAL 352

Query: 369 FYPTLPLGMLTAAMFQGVSKGNNSLFISLLRTIILQIPMAYTFGII----FNQGLTGVWF 424
           F  +  + +  A   +G      ++ ++L     + +P+ Y  G+        G +G+W 
Sbjct: 353 FQFSDAIQVTAAGALRGYQDTRVTMILTLFAYWGIGLPVGYALGLTDWLGAASGPSGLWQ 412

Query: 425 GMILG 429
           G+I+G
Sbjct: 413 GLIVG 417



 Score = 32.3 bits (72), Expect = 3e-05
 Identities = 38/159 (23%), Positives = 68/159 (42%), Gaps = 13/159 (8%)

Query: 16  KAIVKISLPMVIAMSFQSLYNVIDAIWVAGLGSDALAAIGLFFPFMFAIMAISNGVGIGG 75
           K ++ I LP+ IA+  +S    + A+ +  LG+  +A   +   F   +  I   +G+  
Sbjct: 225 KRLLGIGLPIGIAVFAESSIFAVIALLIGSLGATVVAGHQIALNFSSLVFMIPYSLGM-- 282

Query: 76  SSAISRRIGQNNKDAADNIAVHSIVLGIIIGILLIGVIPFLGAIFSLIGASGITVT---M 132
             A++ R+GQ    A    A      G+ +G  L         +F+L G      T   +
Sbjct: 283 --AVTVRVGQALGRAQPREA--RFAAGVGMGTALAYACLSASLMFALRGPIAAIYTADPV 338

Query: 133 AVEYSTILFGGAVVLLFTN----IANAILRGEGDTKRAM 167
            +E +++L   A +  F++     A   LRG  DT+  M
Sbjct: 339 VIEVASMLIVYAALFQFSDAIQVTAAGALRGYQDTRVTM 377