Pairwise Alignments

Query, 460 a.a., MATE family efflux transporter from Methanococcus maripaludis S2

Subject, 491 a.a., Multidrug and toxin extrusion (MATE) family efflux pump YdhE/NorM, homolog from Xanthomonas campestris pv. campestris strain 8004

 Score = 94.0 bits (232), Expect = 1e-23
 Identities = 76/351 (21%), Positives = 161/351 (45%), Gaps = 23/351 (6%)

Query: 16  KAIVKISLPMVIAMSFQSLYNVIDAIWVAG-LGSDALAAIGLFFPFMFAIMAISNGVGIG 74
           K ++  +LP++     QSL   I+AIW+   LG  AL A       MF ++    G+G+ 
Sbjct: 14  KNLLLFALPILAGNIAQSLNGSINAIWIGRYLGEAALTAAANANSIMFFLIGSVFGIGMA 73

Query: 75  GSSAISRRIGQNNKDAADNI-AVHSIVLGIIIGILLIGVIPFLGAIFSLIGASGITVTMA 133
            +  I + +G  +   A  +    +   G +  ++ +        + + +G    ++ +A
Sbjct: 74  ATILIGQAMGARDIAQARKVMGTSATFFGGLSALIAVAGWWLAPHLLAAMGTPPASLALA 133

Query: 134 VEYSTILFGGAVVLLFTNIANAILRGEGDTKRAMYAIILGSVLNIVLDPIFIYVL----N 189
            +Y  ++F     +      +A LRG GD +     ++L  VL+IV +P+ I+ +     
Sbjct: 134 EDYLRVIFVAMPTIYLFAFLSAALRGTGDARTPFRFLLLSVVLDIVFNPLLIFGVGPFPQ 193

Query: 190 MGVAGAAWATLL--SLVITGILF-------VYWLFIKKDTFLKISFEKFKLDINIIKEIF 240
           +G+AGAAWAT+L  S+ + G+L        V WL  ++D  L      F++D  I++ + 
Sbjct: 194 LGIAGAAWATVLAQSVALAGLLLYLRSRGHVLWLG-RRDLAL------FRIDPAILRALV 246

Query: 241 SIGLPASISHLTMAFSMFLLTAIVAKAGGNDGIAVFSTGWRIVSMGTIPLVGLATGVTVV 300
             G+P  +  + ++ +M  +  +V    G D  A +    ++ +   +P + L    + +
Sbjct: 247 GKGVPMGLQMVLISLAMIAMLTLV-NGFGTDTAAAYGAALQLWNYVQMPAMALGAACSTM 305

Query: 301 TGAAYGSANPEKLEISYKYALKMGILVETIIAALILIFENQITYLFTYSEN 351
                G+    +++ + +  +    L+  ++ A +++F+     LF  S++
Sbjct: 306 AAQNVGAGLWARVDATARTGVAANFLMTGLLIAPLILFDRWTLALFLPSDS 356