Pairwise Alignments

Query, 460 a.a., MATE family efflux transporter from Methanococcus maripaludis S2

Subject, 495 a.a., MATE efflux family protein (RefSeq) from Shewanella loihica PV-4

 Score =  144 bits (362), Expect = 9e-39
 Identities = 112/456 (24%), Positives = 215/456 (47%), Gaps = 14/456 (3%)

Query: 1   MKTTKGVQNLLGDPKKAIVKISLPMVIAMSFQSLYNVIDAIWVAGLGSDALAA-IGLFFP 59
           M T K VQ   G   + I+ +S    I +S   + ++ID  +++ LG   LAA +G    
Sbjct: 1   MTTAKFVQ---GSIMRHILVMSSTAAIGISALFVVDLIDIFFLSLLGEQELAAAVGYAGT 57

Query: 60  FMFAIMAISNGVGIGGSSAISRRIGQNNKDAADNIAVHSIVLGIIIG-ILLIGVIPFLGA 118
             F   +I  G+ I   + +SR +G    + A  + ++S V+ +++  ++ I V  F+  
Sbjct: 58  ISFFTTSIGIGLSIALGALVSRAVGAKEFELAKRLLLNSAVVTVLVASVVAIIVTCFIPE 117

Query: 119 IFSLIGASGITVTMAVEYSTILFGGAVVLLFTNIANAILRGEGDTKRAMYAIILGSVLNI 178
           + +L+GA+G T  +A  Y  IL     ++       A LR  GD K +M + + G  +N+
Sbjct: 118 LLTLVGATGRTGELAAGYLYILVPSMPIICLAMALGAALRAVGDAKLSMVSTLTGGGVNL 177

Query: 179 VLDPIFIYVLNMGVAGAAWATLLSLVITGILFVYWLFIKKDTFLKISFEKFKLDINIIKE 238
           V DPIFI++L MG+ GAA A++L+ +   ++    + +K   F +     FK D   IK 
Sbjct: 178 VFDPIFIFLLAMGIEGAALASVLARLAVLLVAARGVVVKHKLFGRFDLTAFKED---IKP 234

Query: 239 IFSIGLPASISHLTMAFSMFLLTAIVAKAGGNDGIAVFSTGWRIVSMGTIPLVGLATGVT 298
           IF+I  PA ++++       ++T  +A+  G+  +A ++   R+  +    +  L+  + 
Sbjct: 235 IFAIAGPAMMTNIATPIGNAVVTRAIAEF-GDSYVAAWAVLGRLTPVAFGMIFALSGAIG 293

Query: 299 VVTGAAYGSANPEKLEISYKYALKMGILVETIIAALILIFENQITYLFTYSENSVHILEG 358
            + G  +G+    ++  S   AL+   L    ++ L+++ + QI  LF     S  ++  
Sbjct: 294 PIVGQNFGAREFARVRQSLTKALQFCALYVVTVSLLLMLLQEQIVALFAMQGESAELIR- 352

Query: 359 LLVFLKYMFLFYPTLPLGMLTAAMFQGVSKGNNSLFISLLRTIILQIPMAYTFGIIFNQG 418
              F +Y+ +F+       +  A F  + K   S   ++ +  +  IP  Y  G +   G
Sbjct: 353 --FFCRYIAVFFVFSGALFVANASFNNLGKAKYSTLFNVGKATLGTIPFVYYGGQL--GG 408

Query: 419 LTGVWFGMILGHVIAVSIAYLLGIYTIRQFKTTLTP 454
           + GV  G +LG ++   +  L     + + + +  P
Sbjct: 409 VEGVLIGQVLGAILFGVLGVLTAYRLVDKVQASAVP 444