Pairwise Alignments

Query, 460 a.a., MATE family efflux transporter from Methanococcus maripaludis S2

Subject, 459 a.a., MATE efflux family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 86.3 bits (212), Expect = 2e-21
 Identities = 95/442 (21%), Positives = 186/442 (42%), Gaps = 23/442 (5%)

Query: 12  GDPKKAIVKISLPMVIAMSFQSLYNVIDAIWVAGLGSDALAAIGLFFPFMFAIMAISNGV 71
           G   K +++++LP++IA   Q++   ID +    + +  +AA+ +        +    G+
Sbjct: 5   GFQAKRLIQLALPVLIAQVTQTMMGFIDTVMAGRVSAVDMAAVAVGTSLWLPAILFVQGL 64

Query: 72  GIGGSSAISRRIGQNNKDAADNIAVHSIVLGIIIGILLIGVIPFLGA---IFSLIGASGI 128
            +  +   +   G NN+ A   +A     L +I G   +GV+ FL +   + S +     
Sbjct: 65  LMAFTPLFAHHNGANNQKAIQPLAFQGAYLALIGG---LGVMVFLASAPLVLSHMNLEPQ 121

Query: 129 TVTMAVEYSTILFGGAVVLLFTNIANAILRGEGDTKRAMYAIILGSVLNIVLDPIFIY-- 186
              + + Y   +  GA   +   +      G   T   M    +G  +NI  + IFIY  
Sbjct: 122 LYNLTIGYIDGILWGAPAFVLYQVLRGCSEGISYTLPTMVIGFVGLAVNIPANYIFIYGH 181

Query: 187 --VLNMGVAGAAWATLLSLVITGILF---VYWLFIKKDTFLKISFEKFKLDINIIKEIFS 241
             +  MG AG   AT  +LV   +L    +Y  F KK   L    +  + D   +K++  
Sbjct: 182 FGIPAMGGAGCGIAT--ALVFWAMLIAMAIYMQFHKKFAALAPFSQFHRPDFATMKKMTK 239

Query: 242 IGLPASISHLTMAFSMFLLTAIVAKAGGNDGIAVFSTGWRIVSMGTIPLVGLATGVTVVT 301
           +GLP +++ L    S+F + A++    G   +A         ++  +  + +   V++  
Sbjct: 240 LGLPIAMA-LFFEVSLFAIIALLLAPLGATVVASHQIALNFSAIVFMLPLSIGIAVSIRI 298

Query: 302 GAAYGSANPEKLEISYKYALKMGILVETIIAALILIFENQITYLFTYSENSVHILEGLLV 361
           G   G    +   +  K  L + + +    A L ++F  QI  L+  S+  V +L G L+
Sbjct: 299 GYYLGRDRADISAVVAKVGLLLALSLALSTAILTVLFRFQIAELYN-SDPEVVVLAGSLM 357

Query: 362 FLKYMFLFYPTLPLGMLTAAMFQGVSKGNNSLFISLLR----TIILQIPMAYTFGIIFNQ 417
            +  ++    ++   ++ A   +G     ++ +I+L       + L   +AYT  I+   
Sbjct: 358 LMAALYQLSDSVQ--VVAAGALRGYKDTRSAFYITLFSYWGIGMSLGYTLAYTDFIVPAM 415

Query: 418 GLTGVWFGMILGHVIAVSIAYL 439
           G  G W G+I G   A  + ++
Sbjct: 416 GAHGFWTGLIAGLTSAALLFFI 437