Pairwise Alignments

Query, 460 a.a., MATE family efflux transporter from Methanococcus maripaludis S2

Subject, 501 a.a., MATE efflux family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  137 bits (344), Expect = 1e-36
 Identities = 107/442 (24%), Positives = 203/442 (45%), Gaps = 29/442 (6%)

Query: 12  GDPKKAIVKISLPMVIAMSFQSLYNVIDAIWVAGLGSDALAA-IGLFFPFMFAIMAISNG 70
           G   + I+ +S    + +S   + +++D  +++ LG   LAA +G      F    I  G
Sbjct: 9   GSILRHILVMSSTAAVGISALFVVDLLDIFFLSLLGEHELAAAVGYAGSISFFTTLIGIG 68

Query: 71  VGIGGSSAISRRIGQNNKDAADNIAVHSIVLGIIIGILL-IGVIPFLGAIFSLIGASGIT 129
           + I   + +SR IG  + + A  + ++S V+  +I + + I V  F+  + +L+GASG T
Sbjct: 69  LSIALGALVSRSIGAKDVELAKRLLLNSAVVTTLISVFVSIVVTTFIPELVTLVGASGHT 128

Query: 130 VTMAVEYSTILFGGAVVLLFTNIANAILRGEGDTKRAMYAIILGSVLNIVLDPIFIYVLN 189
             +A  Y  IL      +         LR  GD K +M + + G  +N VLDPIFI++  
Sbjct: 129 AELAESYLYILVPSLPFICLAMALGGALRSVGDAKLSMMSTLAGGGVNAVLDPIFIFLFA 188

Query: 190 MGVAGAAWATLLSLVITGILFVYWLFIKKDTFLKISFEKFKLDINIIKEIFSIGLPASIS 249
           MG+ GAA A++L+ +   ++    + +K     K +   FK D   +K IF+I  PA ++
Sbjct: 189 MGIEGAALASVLARITVFVIAGRGVMVKHQLLGKFNRSDFKAD---LKPIFAIAGPAILT 245

Query: 250 HLTMAFSMFLLTAIVAKAGGNDGIAVFSTGW----RIVSMGTIPLVGLATGVTVVTGAAY 305
           ++        +T  +A  G       +  GW    R+V +    +  L+  +  + G  +
Sbjct: 246 NIATPIGNAFVTRAIADFGD-----AYVAGWAVLGRLVPVTFGMIFALSGAIGPIVGQNF 300

Query: 306 GSANPEKLEISYKYALKMGILVETIIAALILIFENQITYLFTYSENSVHILEGLLVFLKY 365
           G+   +++  S   A++   L   +++ L+ + ++QI  LF    +S  ++E    ++  
Sbjct: 301 GAGRFDRVRESLTKAIQFCTLYVVVMSLLLFLLKSQIVSLFDMKGDSAALIEFFCSYIAV 360

Query: 366 MFLFYPTLPLGMLTAAMFQGVSKGNNSLFISLLRTIILQIPMAY-------TFGIIFNQG 418
            F+F   L    +  A F  + K   S   ++ +  +  +P  Y        +G++  Q 
Sbjct: 361 FFIFSGIL---FVANASFNNLGKAKYSTLFNVGKATLGTVPFVYVGAQLGGVYGVLIGQV 417

Query: 419 LTGVWFGMILGHVIAVSIAYLL 440
           +  + FG     V+ V +AY L
Sbjct: 418 IGSILFG-----VVGVWVAYRL 434