Pairwise Alignments

Query, 460 a.a., MATE family efflux transporter from Methanococcus maripaludis S2

Subject, 450 a.a., putative Na+-driven multidrug efflux pump (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  196 bits (499), Expect = 1e-54
 Identities = 130/437 (29%), Positives = 228/437 (52%), Gaps = 10/437 (2%)

Query: 16  KAIVKISLPMVIAMSFQSLYNVIDAIWVA-GLGSDALAAIGLFFPFMFAIMAISNGVGIG 74
           K +++ ++P +IAM+  SLYN++D+I++  G+G+ A++ + L FP M    A  + VG+G
Sbjct: 17  KLLMQYAIPAIIAMTASSLYNMVDSIFIGHGVGAMAISGLALTFPLMNLAAAFGSLVGVG 76

Query: 75  GSSAISRRIGQNNKDAADNIAVHSIVLGIIIGILL-IGVIPFLGAIFSLIGASGITVTMA 133
            ++ +S ++GQ + D A  +  + +VL IIIG+   +  + FL  I    G S  TV  A
Sbjct: 77  AATLVSVKLGQKDYDTAQRVLGNVLVLNIIIGLAFTVLTLIFLDPILYFFGGSEATVGYA 136

Query: 134 VEYSTILFGGAVVLLFTNIANAILRGEGDTKRAMYAIILGSVLNIVLDPIFIYVLNMGVA 193
            +Y  ++  G V+       NA+LR  G  ++AMYA I   V+N +LDPIFIY    G+ 
Sbjct: 137 RDYMVVILWGNVITHLYLGLNAVLRSAGHPQKAMYATIATVVINTILDPIFIYGFGWGIQ 196

Query: 194 GAAWATLLSLVITGILFVYWLFIKKDTFLKISFEKFKLDINIIKEIFSIGLPASISHLTM 253
           GAA AT+ + VI  +L+ + LF  KD  L      F+L   I+ +  +IG+   + +L  
Sbjct: 197 GAAIATITAQVI-ALLWQFKLFSNKDELLHFHKGIFRLKKKIVFDSLAIGMAPFLMNLAA 255

Query: 254 AFSMFLLTAIVAKAGGNDGIAVFSTGWRIVSMGTIPLVGLATGVTVVTGAAYGSANPEKL 313
            F + L+   + + GG+  I  F    R+V +  + ++GL  G+  + G  +G+    ++
Sbjct: 256 CFIVILINKGLKQHGGDLAIGAFGIVNRLVFLFVMIVMGLNQGMQPIAGYNFGAKQYPRV 315

Query: 314 EISYKYALKMGILVETIIAALILIFENQITYLFTYSENSVHI-LEGLLVFLKYMFLFYPT 372
               K  +    +V TI   + +        +FT  E  V+I  +G    L+ + +F+P 
Sbjct: 316 TQVLKITIYAATIVTTIGFLMGMFIPQLAVSIFTTHEELVNISAKG----LRIVVMFFPI 371

Query: 373 LPLGMLTAAMFQGVSKGNNSLFISLLRTIILQIPMAYTFGIIFNQGLTGVWFGMILGHVI 432
           +   M+T+  FQ +   + ++F+S+ R +++ IP        + Q   GVW  M +  +I
Sbjct: 372 VGFQMVTSNFFQSIGMASKAIFLSISRQVLVLIPCLLILPRFYGQ--LGVWISMPISDLI 429

Query: 433 AVSIAYLLGIYTIRQFK 449
           A  IA  +  +  RQF+
Sbjct: 430 ASLIAGGMLWWQFRQFR 446