Pairwise Alignments

Query, 460 a.a., MATE family efflux transporter from Methanococcus maripaludis S2

Subject, 454 a.a., putative Na+-driven multidrug efflux pump (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  112 bits (280), Expect = 3e-29
 Identities = 106/452 (23%), Positives = 206/452 (45%), Gaps = 19/452 (4%)

Query: 12  GDPKKAIVKISLPMVIAMSFQSLYNVIDAIWVAGLGSDA--LAAIGLFFPFMFAIMAISN 69
           G   K +++ ++P +IA   Q+LY   D ++V G   D+  +AA+ +    M  I  I  
Sbjct: 9   GSVPKVLLQYAVPFLIANVLQALYGGAD-LFVVGQYDDSASVAAVAIGSQVMQTITGIIL 67

Query: 70  GVGIGGSSAISRRIG-QNNKDAADNIAVHSIVLGIIIGILL-IGVIPFLGAIFSLIGASG 127
           G+  G +  I+   G +++K  A  I   S+ L  IIG+LL + ++ F G I  L+    
Sbjct: 68  GITTGTTVLIAIATGAKDDKKVAFTIG-SSVWLFSIIGVLLTLVMVVFHGRIAELMHTPI 126

Query: 128 ITVTMAVEYSTILFGGAVVLLFTNIANAILRGEGDTKRAMYAIILGSVLNIVLDPIFIYV 187
             +     Y  +   G + ++  N+   ILRG GD+K  +Y + L  V+NIVLD I +  
Sbjct: 127 EAMADTKSYILVCSAGILFIVGYNVVCGILRGLGDSKTPLYFVALACVINIVLDFILVGY 186

Query: 188 LNMGVAGAAWATLLSLVITGILFVYWLFIKKDTFLKISFEKFKLDINIIKEIFSIGLPAS 247
            ++G  GAA AT+ +  ++  +   W   +     + + +  +L+ N+ K++ ++G P +
Sbjct: 187 FHLGATGAAVATITAQGVS-FMISLWFLYRHGFHFEFTRKDIRLNRNLAKKVMTLGAPIA 245

Query: 248 ISHLTMAFSMFLLTAIVAKAGGNDGIAVFSTG--WRIVSMGTIPLVGLATGVTVVTGAAY 305
           +    +  S  ++T IV + G    IA  S G   +I+    +P + +++ V  +T   Y
Sbjct: 246 LQDALINISFLIITVIVNQMG---VIASASLGVVEKIIVFAMLPPMAISSAVATMTAQNY 302

Query: 306 GSANPEKLEISYKYALKMGILVETIIAALILIFENQITYLFT-YSENSVHILEGLLVFLK 364
           G+   +++       L  GI +  +    + ++   +    T +      ++     +L+
Sbjct: 303 GAGLIQRM----NRCLASGIGIAFVFGVSVCVYSQFLPETLTAFFTKDAAVVSMAAEYLR 358

Query: 365 YMFLFYPTLPLGMLTAAMFQGVSKGNNSLFISLLRTIILQIPMAYTFGIIFNQGLTGVWF 424
              +    +       + F G       +  SL+ T + +IP++Y F  I +  L  + F
Sbjct: 359 GYSIDCIVVSFVFCINSYFSGQGNSLFPMIHSLIATFLFRIPLSYWFSQIDSSSLFIMGF 418

Query: 425 GMILGHVIAVSIAYLLGIYTIRQ--FKTTLTP 454
              L  V+++ I      YT ++   K T+ P
Sbjct: 419 APPLSTVVSLLICIWYLRYTRKKVYLKGTMMP 450