Pairwise Alignments

Query, 253 a.a., ABC transporter permease from Methanococcus maripaludis S2

Subject, 261 a.a., ABC-type multidrug transport system, permease component from Pseudomonas fluorescens FW300-N2E2

 Score =  100 bits (248), Expect = 4e-26
 Identities = 61/242 (25%), Positives = 125/242 (51%), Gaps = 10/242 (4%)

Query: 3   AFSAMFYRQLRRFTRAKSRVIGSLLNPLVWLVFFGIGWSRAFDFPAAREI--FGGVDYLT 60
           A + + YR++RRF R   +   +LL P + +V + +     F     R+I   GG  Y+ 
Sbjct: 13  ALNTIVYREVRRFMRIWPQ---TLLPPAITMVLYFV----IFGNLIGRQIGDMGGFTYMD 65

Query: 61  YLIPGVVSMTVFSGSFISGVTVIWDKQFG-FLKETLVAPTSRSEAILGRIMGDSITALIQ 119
           Y++PG++ M+V + S+ + V+  +  +F   ++E +V+P S    ++G  +G  +  L  
Sbjct: 66  YIVPGLIMMSVITNSYGNVVSSFFGSKFQRSIEELMVSPVSPHTILIGYTLGGVLRGLAV 125

Query: 120 GVLIMVLSLFLVSLNPFGMIPVIFTSFILAVAFASVGISLGLKINSQEGFHLIFGLLMQP 179
           G+++ +LSLF   L    +   +    + A  F+ +G    +   + +   +I   ++ P
Sbjct: 126 GLIVTLLSLFFTDLQVHHLGVTVLVVVLTATIFSLLGFINAVFARNFDDISIIPTFVLTP 185

Query: 180 LIFLSGAFYPIDAMPTWMKILAYINPLTYAVDSARYFLAGFSRFPIMLDVSILIVLSVFL 239
           L +L G FY I  +P + + ++  NP+ + V++ RY + G S   I + ++ ++V +V L
Sbjct: 186 LTYLGGVFYSISLLPPFWQTVSLANPVLHMVNAFRYGILGVSDIKISIAITFMLVATVVL 245

Query: 240 VV 241
            +
Sbjct: 246 YI 247