Pairwise Alignments

Query, 253 a.a., ABC transporter permease from Methanococcus maripaludis S2

Subject, 263 a.a., alcohol ABC transporter, permease protein from Pseudomonas stutzeri RCH2

 Score = 97.8 bits (242), Expect = 2e-25
 Identities = 54/209 (25%), Positives = 105/209 (50%), Gaps = 4/209 (1%)

Query: 10  RQLRRFTRAKSRVIGSLLNPLVWLVFFGIGWSRAFDFPAAREIFGGVDYLTYLIPGVVSM 69
           R+  RF + +SR   +L+ PL+WLV F  G+  A            + Y TY++PG+  M
Sbjct: 14  REWLRFVQQRSRFFSALVRPLLWLVVFAAGFRAALGIAIIEPYDTYITYETYIVPGLACM 73

Query: 70  TVFSGSFISGVTVIWDKQFGFLKETLVAPTSRSEAILGRIMGDSITALIQGVLIMVLSLF 129
            +        +++++D++ G ++  L +P  RS  +  +++  ++ +L+Q    + ++ F
Sbjct: 74  ILLFNGMQGSLSMVYDREMGSMRVLLTSPLPRSFLLASKLVAIALISLLQVYAFLAIAWF 133

Query: 130 LVSLNP-FGMIPVIFTSFILAVAFASVGISLGLKINSQEGFHLIFGLLMQPLIFLSGAFY 188
                P  G++  +    ++A+  +++G+ L   I   E F  +   ++ P+ FLS A Y
Sbjct: 134 YGVQPPLLGLLVALPALLLVALLLSALGLLLSNGIRQLENFAGVMNFVIFPMFFLSSALY 193

Query: 189 PIDAM---PTWMKILAYINPLTYAVDSAR 214
           P+  M     W+  L  INP T+AV+  R
Sbjct: 194 PLWKMRDASEWLYWLCAINPFTHAVELVR 222