Pairwise Alignments

Query, 253 a.a., ABC transporter permease from Methanococcus maripaludis S2

Subject, 271 a.a., putative ABC-2 type transport system permease protein from Synechococcus elongatus PCC 7942

 Score = 77.8 bits (190), Expect = 2e-19
 Identities = 60/239 (25%), Positives = 114/239 (47%), Gaps = 26/239 (10%)

Query: 22  VIGSLLNPLVWLVFFGIGWSRAFDFPAAREIFGGVDYLTYLIPGVVSMTVFSGSFISGVT 81
           V   L++PL+++V FG G   +   P +    G   YL +++PG+V+++  + SF  G T
Sbjct: 41  VSSGLVSPLIYIVAFGFGLGSSLR-PGSGLPSGYNSYLEFILPGMVALSSMAISF-GGTT 98

Query: 82  V------IWDKQFGFLKETLVAPTSRSEAILGRIMGDSITALIQGVLIMVLSLFLVS--- 132
                  ++ K F   +ETL+ P       +G+++   +  L+  V ++ +++       
Sbjct: 99  FSICGERLFSKTF---EETLLLPVHPLALHIGKMIAGVVRGLLTSVSLLAIAILATGSWG 155

Query: 133 -LNPFGMIPVIFTSFILAVAFASVGISLGLKINSQEGFHLIFGLLMQPLIFLSGAFYPID 191
            LNP  ++ ++         FA +G+ +GL++ S E   L    L+ P+ FL   F+   
Sbjct: 156 FLNPLFLLTLVLN----CATFAGIGVLVGLRVKSLETVGLYNNFLIVPMSFLGATFFDPA 211

Query: 192 AMPTWMKILAYINPLTY---AVDSARYFLAGFSRFPIMLDVSILIVLSVFLVVLAMYTF 247
            +P  +K   Y+ PLTY    + +A Y  A +  + ++    IL++L+  L  L    F
Sbjct: 212 QLPIVLKAAVYLMPLTYTNLGLRAAAYNPANYPWYSLL----ILVLLATSLAALGAKQF 266