Pairwise Alignments

Query, 253 a.a., ABC transporter permease from Methanococcus maripaludis S2

Subject, 276 a.a., ABC-2 transporter component (NCBI) from Rhodospirillum rubrum S1H

 Score =  120 bits (302), Expect = 2e-32
 Identities = 82/244 (33%), Positives = 129/244 (52%), Gaps = 12/244 (4%)

Query: 6   AMFYRQLRRFTRAKSRVIGSLLNPLVWLVFFGIGWSRAFDFPAAREIFGGVDYLTYLIPG 65
           A+  R+  RF R  +R+ GS+  PL++ +  G G S +F  P        + Y  Y  PG
Sbjct: 22  ALAKREFTRFVRQPARLAGSIGQPLLFWLVLGSGLSPSFR-PTG---MAAMSYTEYFYPG 77

Query: 66  VVSMTVFSGSFISGVTVIWDKQFGFLKETLVAPTSRSEAILGRIMGDSITALIQGVLIMV 125
           ++ M V   S  S +TVI D+  GFL+  LVAP SR   +LG++ G +  AL Q ++++ 
Sbjct: 78  MLLMMVLFASVFSTITVIEDRDQGFLQGVLVAPVSRLAIVLGKVGGAAAIALFQSIVLLC 137

Query: 126 LSLFL-VSLNPFGMIPVIFTSFILAVAFASVGISLGLKINSQEGFHLIFGLLMQPLIFLS 184
            +  L  S  P G + ++ T  +L++ F  +G      + S  GFH +  L++ PL FLS
Sbjct: 138 AAPVLGFSTGPLGYLLILVTLTLLSLGFTGLGFLTAWGMASTSGFHAVMMLVLMPLWFLS 197

Query: 185 GAFYPIDAMPTWMKILAYINPLTYAVDSARYFLAGFSRFP--IMLDVSILIVLSV--FLV 240
           GA +P+  +P  ++ L  INP+T+ +   R   A F   P  ++ D S L  L+V    V
Sbjct: 198 GALFPVQGVPAVLEGLMMINPVTHGMTILR---APFYEAPGALLSDGSYLGSLAVVALWV 254

Query: 241 VLAM 244
           VLA+
Sbjct: 255 VLAL 258