Pairwise Alignments

Query, 253 a.a., ABC transporter permease from Methanococcus maripaludis S2

Subject, 371 a.a., ABC-2 transporter component (NCBI) from Rhodospirillum rubrum S1H

 Score = 73.6 bits (179), Expect = 6e-18
 Identities = 48/192 (25%), Positives = 102/192 (53%), Gaps = 5/192 (2%)

Query: 62  LIPGVVSM-TVFSGSFISGVTVIWDKQFGFLKETLVAPTSRSEAILGRIMGDSITALIQG 120
           ++PG+V++  + +G  ++ +++  +++FG   + +V+P    E + G+++   +  L   
Sbjct: 178 MVPGLVAIIALLTGLVVTALSIAREREFGTFDQLMVSPLRTHEILAGKMIPPILIGLAHI 237

Query: 121 VLIMVLSLFLVSLNPFGMIPVIFTSFILAVAFASVGISLGLKINSQEGFHLIFG--LLMQ 178
              +V+S+F+  +   G + V++ S ++ +A A VG+ L +   S      I G  +LM 
Sbjct: 238 TAFLVVSIFVFEIPFRGSLFVLYGSSVVYLA-AVVGLGLFISALSMTQQQAILGAFMLMV 296

Query: 179 PLIFLSGAFYPIDAMPTWMKILAYINPLTYAVDSAR-YFLAGFSRFPIMLDVSILIVLSV 237
           P++ LSG   PID MP W++ L  ++PL Y +   +  FL   +   ++ +V  L  ++V
Sbjct: 297 PMVLLSGFASPIDNMPEWLQPLTRLDPLRYYLVIVKGLFLKDLALTEVIANVVPLAAIAV 356

Query: 238 FLVVLAMYTFEK 249
             +  A + F +
Sbjct: 357 VTLGAAAWLFRR 368