Pairwise Alignments

Query, 253 a.a., ABC transporter permease from Methanococcus maripaludis S2

Subject, 253 a.a., inner membrane transport permease from Phaeobacter inhibens DSM 17395

 Score = 85.5 bits (210), Expect = 1e-21
 Identities = 61/230 (26%), Positives = 116/230 (50%), Gaps = 10/230 (4%)

Query: 3   AFSAMFYRQLRRFTRAKSR-VIGSLLNPLVWLVFFGIGWSRAFDFPAAREIFGGVDYLTY 61
           A ++++  ++ RF R   +  +  +L+  ++ V FG       D     E+  GV Y  +
Sbjct: 5   AIASIYRFEMARFFRTLMQSFLSPVLSTSLYFVVFGAAIGSRID-----EV-EGVPYGAF 58

Query: 62  LIPGVVSMTVFSGSFISGVTVIWDKQF-GFLKETLVAPTSRSEAILGRIMGDSITALIQG 120
           ++PG++ ++V + +  +    I+  +F G + E L AP +  E ++G +   +  AL  G
Sbjct: 59  IVPGLIMLSVMTQATSNASFGIYFPKFIGTIYELLSAPVNFLEIVIGYVGAAATKALFIG 118

Query: 121 VLIMVLSLFLVSLNPFGMIPVIFTSFILAVAFASVGISLGLKINSQEGFHLIFGLLMQPL 180
           V+I+V +   V L     + ++    +  V+FA +G  +G+   + E   L+  L++ PL
Sbjct: 119 VVILVTASLFVDLTIAHPLAMVLFMVLTCVSFALLGFIIGVWAKNFEQLQLVPLLIVTPL 178

Query: 181 IFLSGAFYPIDAM-PTWMKILAYINPLTYAVDSARYFLAGFSRFPIMLDV 229
           +FL G+FY I  + P W KI  + NP+ Y +   R+   G S  P+ L +
Sbjct: 179 VFLGGSFYSISMLPPIWQKITLF-NPVVYLISGFRWSFFGASDVPVGLSL 227