Pairwise Alignments

Query, 253 a.a., ABC transporter permease from Methanococcus maripaludis S2

Subject, 262 a.a., ABC-2 type transporter (RefSeq) from Shewanella loihica PV-4

 Score = 94.7 bits (234), Expect = 2e-24
 Identities = 59/252 (23%), Positives = 126/252 (50%), Gaps = 10/252 (3%)

Query: 3   AFSAMFYRQLRRFTR--AKSRVIGSLLNPLVWLVFFGIGWSRAFDFPAAREIFGGVDYLT 60
           AF ++  +++ RFTR   ++ V  ++   L +L+F  +   R  +        GGV Y+ 
Sbjct: 14  AFKSILIKEVTRFTRIWVQTLVPPAISMTLYFLIFGNLVGKRIGEM-------GGVSYME 66

Query: 61  YLIPGVVSMTVFSGSFISGVTVIWDKQFGF-LKETLVAPTSRSEAILGRIMGDSITALIQ 119
           ++ PG++ M+V + S+ +  +  +  +F   L+E +VAP      I G + G     L  
Sbjct: 67  FIAPGLIMMSVITASYSNVASSFFSAKFQRNLEELIVAPVPHYVMIAGYVGGGVARGLCV 126

Query: 120 GVLIMVLSLFLVSLNPFGMIPVIFTSFILAVAFASVGISLGLKINSQEGFHLIFGLLMQP 179
           G ++ ++++F V ++      V  T  + ++ FA  G+   +   S +   ++   ++ P
Sbjct: 127 GTIVTLVAMFFVDISLHHAGLVALTVLLTSILFALGGLINAVFAKSYDDISIVPTFVLTP 186

Query: 180 LIFLSGAFYPIDAMPTWMKILAYINPLTYAVDSARYFLAGFSRFPIMLDVSILIVLSVFL 239
           L +L G FY +  +P++ + ++ +NP+ Y ++  RY   G++   I L V+I++     L
Sbjct: 187 LTYLGGVFYSLTLLPSFWQGVSQLNPVVYMINVFRYGFLGYADISIGLSVAIMVGFCAGL 246

Query: 240 VVLAMYTFEKAV 251
            ++A Y   + +
Sbjct: 247 WLVAYYLISRGI 258