Pairwise Alignments

Query, 253 a.a., ABC transporter permease from Methanococcus maripaludis S2

Subject, 371 a.a., putative ABC transporter permease protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 84.7 bits (208), Expect = 2e-21
 Identities = 56/203 (27%), Positives = 106/203 (52%), Gaps = 15/203 (7%)

Query: 56  VDYLTYLIPGVVSM--TVFSGSFISGVTVIWDKQFGFLKETLVAPTSRSEAILGRIMGDS 113
           ++Y  Y+IP ++ M  T+  G F+  + V+ +K+ G +++  V P  +   IL +++   
Sbjct: 173 LNYKLYMIPALMGMLLTLICG-FLPALNVVSEKEVGTIEQINVTPVPKFTFILAKLLPYW 231

Query: 114 ITALIQGVLIMVLSLFLVSLNPFGMIPVIFTSFILAVAFASVGISLGLKINS------QE 167
           IT  I   L  +L+  L  + P G   VI+    LA+ F  V    GL I++      Q 
Sbjct: 232 ITGFIVLTLCFLLAWLLYGITPVGHFIVIY---FLAILFVFVMSGFGLVISNYSATMQQS 288

Query: 168 GFHLIFGLLMQPLIFLSGAFYPIDAMPTWMKILAYINPLTYAVDSAR-YFLAGFSRFPIM 226
            F + F +L+  L+ +SG F P+ +MP W +++ Y NPL Y ++  R  +L G S   ++
Sbjct: 289 MFVMFFFMLI--LMLMSGLFTPVSSMPEWAQVITYFNPLKYFMEGMRMVYLKGSSLLELL 346

Query: 227 LDVSILIVLSVFLVVLAMYTFEK 249
            ++ +L++ ++     A+ ++ K
Sbjct: 347 PEIGVLLLFALGFNTWAVISYRK 369